1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagcttttgatgaaaatctattttttcttggtactgacatgggtgtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATTTGTAGAGTTTTTGAAGCGCCACGATTTCCACCAGCTTCAG
species | Selaginella moellendorffii |
transcript | EFJ31557 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169076897|gb|FE485290.1|FE485290
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169035711|gb|FE443180.1|FE443180
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGCCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169045304|gb|FE453617.1|FE453617
genomic: CGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGCCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169029571|gb|FE438932.1|FE438932
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGCCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169076232|gb|FE485262.1|FE485262
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169102471|gb|FE508021.1|FE508021
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGCCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169049984|gb|FE458076.1|FE458076
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGCCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169028583|gb|FE440440.1|FE440440
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGCCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169024266|gb|FE433060.1|FE433060
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATEST: gi|169020135|gb|FE428522.1|FE428522
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
EST: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTG AGCGAAGCCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
genomic: CAACTTGCAAGTCGAGGCGACGACCCAGTTCCGGAAGCTACTGTCAATTGgtagcttttg ... gtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGAT
gtagcttttgatgaaaatctattttttcttggtactgacatgggtgtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATTTGTAGAGTTTTTGAAGCGCCACGATTTCCACCAGCTTCAG
tactgac putative branch site (score: 40)
ttttgatgaaaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcttttgatgaaaatctattttttcttggtactgacatgggtgtttgtgaagAGCGAAGGCCTCCGATCGAAGAGGTCATCAAGGCAGGCGTGGTTCCTCGATTTGTAGAGTTTTTGAAGCGCCACGATTTCCACCAGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC