1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaattcctctgtttctaggcggattcacttagtaagctttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA
species | Selaginella moellendorffii |
transcript | EFJ31038 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169065994|gb|FE473778.1|FE473778
genomic: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169098880|gb|FE502277.1|FE502277
genomic: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169068032|gb|FE476399.1|FE476399
genomic: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169072226|gb|FE479358.1|FE479358
genomic: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169098879|gb|FE502276.1|FE502276
genomic: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGT
genomic: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGT
gtaaattcctctgtttctaggcggattcacttagtaagctttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA
ctttgat putative branch site (score: 56)
taaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattcctctgtttctaggcggattcacttagtaagctttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT