1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaagcaaagcagttttccagttgatagtgctcgtttttcatgacttgtgccgtgtttagCGGACGACTGGACGCTTGCGAAACAAAAAGGACAGCAAAGACCGCGATCGAGAGGGTCCTATTATGTTTGCAGACGTTGCAGGGGTTGATGAAGCCAAGG
species | Selaginella moellendorffii |
transcript | EFJ30338 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGGACTTGTTGCCGGACTACTTGCCAGATTTCCCATAAAGTTTCCACAG CGGACGACTGGACGCTTGCGAAACAAAAAGGACAGCAAAGACCGCGATCGAEST: gi|169047420|gb|FE455629.1|FE455629
genomic: TCGGACTTGTTGCCGGACTACTTGCCAGATTTCCCATAAAGTTTCCACAGgtaaagcaaa ... ccgtgtttagCGGACGACTGGACGCTTGCGAAACAAAAAGGACAGCAAAGACCGCGATCGA
EST: GGACTTGTTGCCGGACTACTTGCCAGATTTCCCATAAAGTTTCCACAG CGGACGACTGGACGCTTGCGAAACAAAAAGGACAGCAAAGACCGCGATCGAEST: gi|169063429|gb|FE471431.1|FE471431
genomic: GGACTTGTTGCCGGACTACTTGCCAGATTTCCCATAAAGTTTCCACAGgtaaagcaaa ... ccgtgtttagCGGACGACTGGACGCTTGCGAAACAAAAAGGACAGCAAAGACCGCGATCGA
EST: TCGGACTTGTTGCCGGACTACTTGCCAGATTTCCCATAAAGTTTCCACAG CGGACGACTGGACGCTTGCGAAACAAAAAGGACAGCAAAGACCGCGATCGA
genomic: TCGGACTTGTTGCCGGACTACTTGCCAGATTTCCCATAAAGTTTCCACAGgtaaagcaaa ... ccgtgtttagCGGACGACTGGACGCTTGCGAAACAAAAAGGACAGCAAAGACCGCGATCGA
caaagcagttttccagttgatagtgctcgtttttcatgacttgtgccgtgtttagCGGACGACTGGACGCTTGCGAAACAAAAAGGACAGCAAAGACCGCGATCGAGAGGGTCCTATTATGTTTGCAGACGTTGCAGGGGTTGATGAAGCCAAGG
agttgat putative branch site (score: 13)
tttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcaaagcagttttccagttgatagtgctcgtttttcatgacttgtgccgtgtttagCGGACGACTGGACGCTTGCGAAACAAAAAGGACAGCAAAGACCGCGATCGAGAGGGTCCTATTATGTTTGCAGACGTTGCAGGGGTTGATGAAGCCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC