1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggcatgactatccattctttgtttggttcttctcacactggctgtcgctcgcggtgttccagGTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGACAGAATAGAGCTCCTGGTGGACAAGACATCCACGATGCAAGATAATAGTT
species | Selaginella moellendorffii |
transcript | EFJ30194 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAACCCCGAGGCGGACACGATCAGTCGGGTCAAAGGCGATCTAAACGAG GTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGACEST: gi|169075382|gb|FE483016.1|FE483016
genomic: ATAACCCCGAGGCGGACACGATCAATCGGGTCAAAGGCGATCTAAACGAGgtaggcatga ... ggtgttccagGTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGAC
EST: ATAACCCCGAGGCGGACACGATCAATCGGGTCAAAGGCGATCTAAACGAG GTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGACEST: gi|169113126|gb|FE514372.1|FE514372
genomic: ATAACCCCGAGGCGGACACGATCAATCGGGTCAAAGGCGATCTAAACGAGgtaggcatga ... ggtgttccagGTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGAC
EST: ATAACCCCGAGGCGGACACGATCAGTCGGGTCAAAGGCGATCTAAACGAG GTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGACEST: gi|169075383|gb|FE483017.1|FE483017
genomic: ATAACCCCGAGGCGGACACGATCAATCGGGTCAAAGGCGATCTAAACGAGgtaggcatga ... ggtgttccagGTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGAC
EST: ATAACCCCGAGGCGGACACGATCAATCGGGTCAAAGGCGATCTAAACGAG GTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGAC
genomic: ATAACCCCGAGGCGGACACGATCAATCGGGTCAAAGGCGATCTAAACGAGgtaggcatga ... ggtgttccagGTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGAC
ctatccattctttgtttggttcttctcacactggctgtcgctcgcggtgttccagGTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGACAGAATAGAGCTCCTGGTGGACAAGACATCCACGATGCAAGATAATAGTT
ttctcac putative branch site (score: 5)
attcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcatgactatccattctttgtttggttcttctcacactggctgtcgctcgcggtgttccagGTCCGATCAGTTATGGTCGAAAACATTGACAAAGTCTTGGAACGAGGTGACAGAATAGAGCTCCTGGTGGACAAGACATCCACGATGCAAGATAATAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA