1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cattactgcatcaccatcgcctccgccgcctccgccgccaccaccaccgccaccagcggcagcgccatcgcctcctcaccagctagatttgacgacgcagCAGCAGCAGCCGCAGCCGCAGCCGCAGCCGCAGCTCTGTGTGGACAAGAGGGTAGCAGAAGCGATGCCGTCGGCCGAAATCCCGGTGAGCGAGCGGTGGT
species | Selaginella moellendorffii |
transcript | EFJ30038 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
accgccaccagcggcagcgccatcgcctcctcaccagctagatttgacgacgcagCAGCAGCAGCCGCAGCCGCAGCCGCAGCCGCAGCTCTGTGTGGACAAGAGGGTAGCAGAAGCGATGCCGTCGGCCGAAATCCCGGTGAGCGAGCGGTGGT
tagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattactgcatcaccatcgcctccgccgcctccgccgccaccaccaccgccaccagcggcagcgccatcgcctcctcaccagctagatttgacgacgcagCAGCAGCAGCCGCAGCCGCAGCCGCAGCCGCAGCTCTGTGTGGACAAGAGGGTAGCAGAAGCGATGCCGTCGGCCGAAATCCCGGTGAGCGAGCGGTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- ttactgc
- - - - - - - - tcgcctc
- - - - - - - - - - - - -ccgcctc
- - - - - - - - - - - - - - - - - ccgccac
- - - - - - - - - - - - - - - - - - - -accacca
- - - - - - - - - - - - - - - - - - - - - - - - - - -cagcggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagcta