Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169059886|gb|FE467248.1|FE467248EST: GGATGCTATGCATGATCCGCGATATTTGGCTACTATCCTGGAAAAGAAAG GACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATG
genomic: GGATGCTATGCATGATCCGCGATATTTGGCTACTATCCTGGAAAAGAAAGgtgctgcaac ... ttttgtgcagGACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATG
EST:
gi|169056530|gb|FE464938.1|FE464938EST: GGATGCTATGCATGATCCGCGATATTTGGCTACTATCCTGGAAAAGAAAG GACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATG
genomic: GGATGCTATGCATGATCCGCGATATTTGGCTACTATCCTGGAAAAGAAAGgtgctgcaac ... ttttgtgcagGACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATG
EST:
gi|169047842|gb|FE455933.1|FE455933EST: GGATGCTATGCATGATCCGCGATATTTGGCTACTATCCTGGAAAAGAAAG GACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATG
genomic: GGATGCTATGCATGATCCGCGATATTTGGCTACTATCCTGGAAAAGAAAGgtgctgcaac ... ttttgtgcagGACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATG
EST:
gi|169056529|gb|FE464937.1|FE464937EST: GGATGCTATGCATGATCCGCGATATTTGGCTACTATCCTGGAAAAGAAAG GACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATG
genomic: GGATGCTATGCATGATCCGCGATATTTGGCTACTATCCTGGAAAAGAAAGgtgctgcaac ... ttttgtgcagGACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgctgcaacttccaggagttttgtttcattgttttctgtttttcttttgtgcagGACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATGGGTGCATGCAAGAGTGTGAAAAAGGCAAAGCGTACCAGTGCTGCCTCAA
ttttgtttcattgttt CT-rich tract
tttttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgctgcaacttccaggagttttgtttcattgttttctgtttttcttttgtgcagGACTAACAAGCGTTGTGGGTGAAACTTACTGTTGCCTCAAGAATGGCTATGGGTGCATGCAAGAGTGTGAAAAAGGCAAAGCGTACCAGTGCTGCCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC