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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacgtcgattttgctttgatcgtctctaacaatggtaaagtttcttacagTCACTCGGATATTAACCTCTCGGAGCTGGAGCATGGGCCAAGAAGAGACAATGAGAAAGACAGTCTTCTTGAGAATGGATTCTCCGTCAGTGGCACTCTC

Basic information

species Selaginella moellendorffii
transcript EFJ29067
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169088995|gb|FE493649.1|FE493649
EST:     CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGC                         G
genomic: CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGCgtgagtacgt ... tttcttacag-
EST: gi|169088995|gb|FE493649.1|FE493649
EST:     CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGC                         G
genomic: CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGCgtgagtacgt ... tttcttacag-
EST: gi|169088995|gb|FE493649.1|FE493649
EST:     CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGC                         G
genomic: CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGCgtgagtacgt ... tttcttacag-
EST: gi|169088995|gb|FE493649.1|FE493649
EST:     CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGC                         G
genomic: CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGCgtgagtacgt ... tttcttacag-
EST: gi|169088995|gb|FE493649.1|FE493649
EST:     CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGC                         G
genomic: CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGCgtgagtacgt ... tttcttacag-
EST: gi|169083338|gb|FE491889.1|FE491889
EST:     CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGC                         TCACTCGGATATTAACCTCTCGGAGCTGGAGCATGGGCCAAGAAGAGACAA
genomic: CTTTACTCGGAGTTTCTTGAGTATAGGAAGCAGCCAGTGCCAGGCAAAGCgtgagtacgt ... tttcttacagTCACTCGGATATTAACCTCTCGGAGCTGGAGCATGGGCCAAGAAGAGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagtacgtcgattttgctttgatcgtctctaacaatggtaaagtttcttacagTCACTCGGATATTAACCTCTCGGAGCTGGAGCATGGGCCAAGAAGAGACAATGAGAAAGACAGTCTTCTTGAGAATGGATTCTCCGTCAGTGGCACTCTC
                            ctctaac  putative branch site (score: 2)
                                             tttcttac  putative PPT
                                        taaagttt  TA-rich tract