1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtacttggcttggcatcctcgtttgtgatctaacgtttctcttctctctttttgctacttgtctgtagTGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACAAAGTCGACAAGGAGAAGCTCGTTGCAGGAACTAGGGTAGCGCTCGACAT
species | Selaginella moellendorffii |
transcript | EFJ28962 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCT TGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACAEST: gi|169071647|gb|FE477089.1|FE477089
genomic: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCTgtgagtactt ... ttgtctgtagTGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACA
EST: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCT TGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACAEST: gi|169043515|gb|FE452635.1|FE452635
genomic: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCTgtgagtactt ... ttgtctgtagTGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACA
EST: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCT TGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACAEST: gi|169040793|gb|FE447844.1|FE447844
genomic: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCTgtgagtactt ... ttgtctgtagTGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACA
EST: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCT TGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACAEST: gi|169027923|gb|FE434930.1|FE434930
genomic: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCTgtgagtactt ... ttgtctgtagTGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACA
EST: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCT TGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACA
genomic: CGTCGGGCAGATTATAGGCGAAGTGCTGAGGCAGCTCGACAATGAACGCTgtgagtactt ... ttgtctgtagTGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACA
catcctcgtttgtgatctaacgtttctcttctctctttttgctacttgtctgtagTGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACAAAGTCGACAAGGAGAAGCTCGTTGCAGGAACTAGGGTAGCGCTCGACAT
atctaac putative branch site (score: 46)
cgtttctcttctctct CT-rich tract
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacttggcttggcatcctcgtttgtgatctaacgtttctcttctctctttttgctacttgtctgtagTGATTGTCAAGGCAAGCAGCGGGCCGCGCTATGTTGTTGGGTGTAGAAACAAAGTCGACAAGGAGAAGCTCGTTGCAGGAACTAGGGTAGCGCTCGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC