1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagccttgtgtttctcatttttattctgatgctttgtttttttgttttttgtttttgttcgttgttttcttcgttgcttcctttcagGTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCTCTGAAGGCACTATCAGGACGTTTCTATGCAG
species | Selaginella moellendorffii |
transcript | EFJ27917 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATG GTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCTEST: gi|169052837|gb|FE463594.1|FE463594
genomic: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATGgtaagccttg ... ttcctttcagGTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCT
EST: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATG GTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCTEST: gi|169106125|gb|FE505668.1|FE505668
genomic: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATGgtaagccttg ... ttcctttcagGTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCT
EST: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATG GTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCTEST: gi|169112591|gb|FE510196.1|FE510196
genomic: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATGgtaagccttg ... ttcctttcagGTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCT
EST: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATG GTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCTEST: gi|169023082|gb|FE428731.1|FE428731
genomic: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATGgtaagccttg ... ttcctttcagGTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCT
EST: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATG GTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCTEST: gi|169025523|gb|FE434993.1|FE434993
genomic: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATGgtaagccttg ... ttcctttcagGTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCT
EST: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATG GTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCT
genomic: ATGGGGAGATTGAAAGCCTCAATGTGTGCGACAATCTTGCAGACCATATGgtaagccttg ... ttcctttcagGTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCT
tttgtttttttgttttttgtttttgttcgttgttttcttcgttgcttcctttcagGTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCTCTGAAGGCACTATCAGGACGTTTCTATGCAG
tttttgttcgttgttt CT-rich tract
ttttttgttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccttgtgtttctcatttttattctgatgctttgtttttttgttttttgtttttgttcgttgttttcttcgttgcttcctttcagGTTGGAAATGTGTATGTGCAATTTAGGGAGGAGGAAGAAGCTGCTGCGGCTCTGAAGGCACTATCAGGACGTTTCTATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG