1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacaagcaacacgcttggaagtttgatcgttctttacaactttgcttcggctccagGGAACAAGATCAACAATCTCGACATCGTCTACACTCCCTGGTCGAATCTTAAAAAGTCGTCTTCCATGGACGTCGGCCAAGTTGGATTCCACAATCCCAA
species | Selaginella moellendorffii |
transcript | EFJ26605 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGCTCCTGGAGGACTGCGCTCAGCTCGTCAAGGCAAACTCCATCCAAG GGAACAAGATCAACAATCTCGACATCGTCTACACTCCCTGGTCGAATCTTAEST: gi|169057549|gb|FE464501.1|FE464501
genomic: GGAGCTCCTGGAGGACTGCGCTCAGCTCGTCAAGGCAAACTCCATCCAAGgtaacaagca ... tcggctccagGGAACAAGATCAACAATCTCGACATCGTCTACACTCCCTGGTCGAATCTTA
EST: GGAGCTCCTGGAGGACTGCGCTCAGCTCGTCAAGGCAAACTCCATCCAAG GGAACAAGATCAACAATCTCGACATCGTCTACACTCCCTGGTCGAATCTTA
genomic: GGAGCTCCTGGAGGACTGCGCTCAGCTCGTCAAGGCAAACTCCATCCAAGgtaacaagca ... tcggctccagGGAACAAGATCAACAATCTCGACATCGTCTACACTCCCTGGTCGAATCTTA
acaagcaacacgcttggaagtttgatcgttctttacaactttgcttcggctccagGGAACAAGATCAACAATCTCGACATCGTCTACACTCCCTGGTCGAATCTTAAAAAGTCGTCTTCCATGGACGTCGGCCAAGTTGGATTCCACAATCCCAA
gtttgat putative branch site (score: 42)
ctttgcttc putative PPT
ttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaagcaacacgcttggaagtttgatcgttctttacaactttgcttcggctccagGGAACAAGATCAACAATCTCGACATCGTCTACACTCCCTGGTCGAATCTTAAAAAGTCGTCTTCCATGGACGTCGGCCAAGTTGGATTCCACAATCCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA