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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcttcttctttcttgtgctggattgaaaactcgttaaatcgttgtcgcttgatctgtatggaatgaaaaaaaaggtgatagctttgttggagtggttgtggtggtgttggtggatgctagctaagctaatcttggctgatttcctcgagATTTTCTTTGCTTCCTCTGGCTTTTGCTTTTGTTGCAGGCCATTAAAATAAACTTGATCATCACGGACTATTGTATGCCGGAAATGACAGGCTATGATCT

Basic information

species Selaginella moellendorffii
transcript EFJ26364
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26364 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA04G29250.1 (Glycine max), 3'ss of exon 2
gtgctcttcttctttcttgtgctggattgaaaactcgttaaatcgttgtcgcttgatctgtatggaatgaaaaaaaaggtgatagctttgttggagtggttgtggtggtgttggtggatgctagctaagctaatcttggctgatttcctcgagATTTTCTTTGCTTCCTCTGGCTTTTGCTTTTG-TTGCAGGCCATTAAAATAAACTTGATCATCACGGACTATTGTATGCCGGAAATGACAGGCTATGATCT----------------
                                                                                                           ||           ||||| |||  ||      |||||     |   || || |   ||| ||     | || ||| || |||||||   |  || ||||| ||||||| || || || |||||||| ||||||||||||||||||||                
-----------------------------------------------------------------------------------------------------------gtacaataatcctctagcaaagtcaacaaatactgatacgtac---atattttaaactttctaatcatgttacttctgattgcagGATGTAGAAGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACAGGCTATGATCTGCTGAAAAAGATCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtggtggtgttggtggatgctagctaagctaatcttggctgatttcctcgagATTTTCTTTGCTTCCTCTGGCTTTTGCTTTTGTTGCAGGCCATTAAAATAAACTTGATCATCACGGACTATTGTATGCCGGAAATGACAGGCTATGATCT
                                             tttcctc  CT-rich tract
                                taatctt  TA-rich tract