1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaactccagttgcggtggtttgtgcaggggtcaaatcaatccttgacattccacgaacacttgaatacctggttagctactcaactgatgaatttccagcattttttactcctaacagTGGCTGCAAAGCACCTTGCCGAGCAGACAGTGTGGAGGAATCCGCAGACATCATAG
species | Selaginella moellendorffii |
transcript | EFJ26223 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
aatacctggttagctactcaactgatgaatttccagcattttttactcctaacagTGGCTGCAAAGCACCTTGCCGAGCAGACAGTGTGGAGGAATCCGCAGACATCATAG
aactgat putative branch site (score: 3)
cattttttactcct putative PPT
attttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaactccagttgcggtggtttgtgcaggggtcaaatcaatccttgacattccacgaacacttgaatacctggttagctactcaactgatgaatttccagcattttttactcctaacagTGGCTGCAAAGCACCTTGCCGAGCAGACAGTGTGGAGGAATCCGCAGACATCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA