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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttatcgaacttgtattgtgtttataggattcttcgtttgatcgactaaagAACTGGGCGTCCAGAGCAGACTTGACCGGGTTTGAGATACTCCTTTGCGTTGGAAACAAAGCCGACCGTTTGCCGCAACACTATGGCCACGTCGAGTACC

Basic information

species Selaginella moellendorffii
transcript EFJ26007
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169051738|gb|FE458972.1|FE458972
EST:     ATGGTTTTTGATCTTAGCAACG--A-TTC--TTCGTTTGATCGACTAAAG                         AACTAGGCGTCCAGAGCAGACTTGACCGGGTTTGAGATACTCCTTTGCGT
genomic: ATGGTTTTTGATCTTAGCAACGTAAGCGCATTTC-TTT--TCTTCT--CCgtcttatcga ... tcgactaaagAACTGGGCGTCCAGAGCAGACTTGACCGGGTTTGAGATACTCCTTTGCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttatcgaacttgtattgtgtttataggattcttcgtttgatcgactaaagAACTGGGCGTCCAGAGCAGACTTGACCGGGTTTGAGATACTCCTTTGCGTTGGAAACAAAGCCGACCGTTTGCCGCAACACTATGGCCACGTCGAGTACC
                                       gtttgat  putative branch site (score: 5)
                        tgtttata  TA-rich tract