1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tccattttgcagacacacccgacaacgtttgtggatttgctgataaaagcaaggaaagaattacttcaggttcattataagctcactctaatatgcgcagGGGATTGTCACTACTTTGGAGCTAAAAACGTGTGCATAACTGCTGCTATCTACAACTACACTTCGCAGCTCGAGCATCAGCACAACGTCACCT
species | Selaginella moellendorffii |
transcript | EFJ25892 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
aaagcaaggaaagaattacttcaggttcattataagctcactctaatatgcgcagGGGATTGTCACTACTTTGGAGCTAAAAACGTGTGCATAACTGCTGCTATCTACAACTACACTTCGCAGCTCGAGCATCAGCACAACGTCACCT
ctctaat putative branch site (score: 3)
ttcattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccattttgcagacacacccgacaacgtttgtggatttgctgataaaagcaaggaaagaattacttcaggttcattataagctcactctaatatgcgcagGGGATTGTCACTACTTTGGAGCTAAAAACGTGTGCATAACTGCTGCTATCTACAACTACACTTCGCAGCTCGAGCATCAGCACAACGTCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - ttttgca
- - - - - - - - - - - - - - - - - -tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - aaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatt