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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgatggagacgtgattgtttctatagAAGTTTCGGCTCGCCAAGTATCTTCCTGACACTTTGGGCGATG

Basic information

species Selaginella moellendorffii
transcript EFJ25555
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctgatggagacgtgattgtttctatagAAGTTTCGGCTCGCCAAGTATCTTCCTGACACTTTGGGCGATG
                          ttctgat  putative branch site (score: 3)
                                           ttgtttct  putative PPT
                                              tttctata  TA-rich tract