1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtggcttctcaaacttttgttttggcgagtggttctcaactctcttttatctcttttttcttgatctttgtttgtagATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTCTGGAAGAGACTTCGTTCCGGGGAAGAACGGCCGACTTCTTCTTCATGCT
species | Selaginella moellendorffii |
transcript | EFJ25138 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTACTTTGGTCGACTTG ATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTCEST: gi|169044530|gb|FE451115.1|FE451115
genomic: CTACTTTGGTCGACTTGgtgagtggct ... ttgtttgtagATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTC
EST: CTACGAAGTCTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTG ATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAACTTCEST: gi|169064366|gb|FE472033.1|FE472033
genomic: CTACGAAGTGTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTGgtgagtggct ... ttgtttgtagATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTC
EST: CTACGAAGTGTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTG ATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTCEST: gi|169051522|gb|FE459757.1|FE459757
genomic: CTACGAAGTGTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTGgtgagtggct ... ttgtttgtagATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTC
EST: CTACCAAATCTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTG ATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAACTTCEST: gi|169064365|gb|FE472032.1|FE472032
genomic: CTACGAAGTGTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTGgtgagtggct ... ttgtttgtagATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTC
EST: CTACGAAGTGTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTG ATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTCEST: gi|169039143|gb|FE448298.1|FE448298
genomic: CTACGAAGTGTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTGgtgagtggct ... ttgtttgtagATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTC
EST: CTACGAAGTGTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTG ATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTC
genomic: CTACGAAGTGTGGCGCTTGGTCACAAACTTCTTCTACTTTGGTCGACTTGgtgagtggct ... ttgtttgtagATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTC
tggcgagtggttctcaactctcttttatctcttttttcttgatctttgtttgtagATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTCTGGAAGAGACTTCGTTCCGGGGAAGAACGGCCGACTTCTTCTTCATGCT
tcttgat putative branch site (score: 4)
ttctcaactctctttt CT-rich tract
ttttatctctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtggcttctcaaacttttgttttggcgagtggttctcaactctcttttatctcttttttcttgatctttgtttgtagATCTCGACTTTCTCTTTCACATGTTCTTCCTCGCTCGGTACTGCAAGCTTCTGGAAGAGACTTCGTTCCGGGGAAGAACGGCCGACTTCTTCTTCATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC