1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agctttttctactgctttctccactgttcctggtttggtcgagtgggttcttgcgggaaaaaacaggaaaaatctaatttttatcctacaaaacttgcagGCGTTTCTCCCGGCGAGGGAACTGGCGCGACAATGTCCGAGGACGAGGACGATCAGCAAGCCGACAGTGATTCCGGCTACTACGACGCGGGGATGGACGG
species | Selaginella moellendorffii |
transcript | EFJ24870 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCCGTCGTGGCATGCTGGGAGCTAGAACAGTCCTTGTTCACGCTAACAG GCGTTTCTCCCGGCGAGGGAACTGGCGCGACAATGTCCGAGGACGAGGACG
genomic: AGCCGTCGTGGCATGCTGGGAGCTAGAACAGTCCTTGTTCACGCTAACAGgcaagcataa ... aaacttgcagGCGTTTCTCCCGGCGAGGGAACTGGCGCGACAATGTCCGAGGACGAGGACG
ggttcttgcgggaaaaaacaggaaaaatctaatttttatcctacaaaacttgcagGCGTTTCTCCCGGCGAGGGAACTGGCGCGACAATGTCCGAGGACGAGGACGATCAGCAAGCCGACAGTGATTCCGGCTACTACGACGCGGGGATGGACGG
atctaat putative branch site (score: 12)
aaaaaacaggaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctttttctactgctttctccactgttcctggtttggtcgagtgggttcttgcgggaaaaaacaggaaaaatctaatttttatcctacaaaacttgcagGCGTTTCTCCCGGCGAGGGAACTGGCGCGACAATGTCCGAGGACGAGGACGATCAGCAAGCCGACAGTGATTCCGGCTACTACGACGCGGGGATGGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - ttttcta
- - - - - - - -tttctcc
- - - - - - - - - - - - tgttcct
- - - - - - - - - - - - - - - - -tttggtc
- - - - - - - - - - - - - - - - - - - - - - - -ttcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaaa