1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctctaagtttcttctttttctagacttggtttagttctcttagGCTGTCGAGAATGCCGTAAGAATGCTCAAGGAGGGAGGGATGGACGCGATCAAGCTGGAAGGTGGTAGCGTTTCTCGAGTAGCTGCAGCCAAGGCCATTT
species | Selaginella moellendorffii |
transcript | EFJ24767 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTCGTTGGGGATCTTCCTTTTGGGAGCTACGAGCTAAGCTCCGACCAG GCTGTCGAGAATGCCGTAAGAATGCTCAAGGAGGGAGGGATGGACGCGATCEST: gi|169034458|gb|FE446403.1|FE446403
genomic: TTCTCGTTGGGGATCTTCCTTTTGGGAGCTACGAGCTAAGCTCCGACCAGgtctctaagt ... gttctcttagGCTGTCGAGAATGCCGTAAGAATGCTCAAGGAGGGAGGGATGGACGCGATC
EST: CCTTTTGGGAGCTACGAGCTAAGCTCCGACCAG GCTGTCGAGAATGCCGTAAGAATGCTCAAGGAGGGAGGGATGGACGCGATC
genomic: CCTTTTGGGAGCTACGAGCTAAGCTCCGACCAGgtctctaagt ... gttctcttagGCTGTCGAGAATGCCGTAAGAATGCTCAAGGAGGGAGGGATGGACGCGATC
gtctctaagtttcttctttttctagacttggtttagttctcttagGCTGTCGAGAATGCCGTAAGAATGCTCAAGGAGGGAGGGATGGACGCGATCAAGCTGGAAGGTGGTAGCGTTTCTCGAGTAGCTGCAGCCAAGGCCATTT
ttctctt CT-rich tract
ttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctaagtttcttctttttctagacttggtttagttctcttagGCTGTCGAGAATGCCGTAAGAATGCTCAAGGAGGGAGGGATGGACGCGATCAAGCTGGAAGGTGGTAGCGTTTCTCGAGTAGCTGCAGCCAAGGCCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG