1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggcagtctcttgccgtttcgtagactttaaaagtcgtcctgtttgattttttctcgtcaattccagcacaagttgaacgagtgctttctgcatgtaacagATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGCTTGCGGGCTTACGATCGATCACCCGATCATGACGTCGACTGAGTTTTGG
species | Selaginella moellendorffii |
transcript | EFJ24698 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCACTCAGTGGAACCTCGATTTCACCTCCGACAGTGAACAGGGTGGAAG ATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGCEST: gi|169072296|gb|FE480221.1|FE480221
genomic: GTCACTCAGTGGAACCTCGATTTCACCTCCGACAGTGAACAGGGTGGAAGgtacgggaaa ... catgtaacagATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGC
EST: GTCACTCAGTGGAACCTGGATTTCACCTCCGACAGTGAACAAGGTGGAAG ATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGCEST: gi|169055872|gb|FE466113.1|FE466113
genomic: GTCACTCAGTGGAACCTCGATTTCACCTCCGACAGTGAACAGGGTGGAAGgtacgggaaa ... catgtaacagATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGC
EST: GTCACTCAGTGGAACCTCGATTTCACCTCCGACAGTGAACAGGGTGGAAG ATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGCEST: gi|169116329|gb|FE517692.1|FE517692
genomic: GTCACTCAGTGGAACCTCGATTTCACCTCCGACAGTGAACAGGGTGGAAGgtacgggaaa ... catgtaacagATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGC
EST: GTCACTCAGTGGAACCTCGATTTCACCTCCGACAGTGAACAGGGTGGAAG ATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGCEST: gi|169018655|gb|FE427568.1|FE427568
genomic: GTCACTCAGTGGAACCTCGATTTCACCTCCGACAGTGAACAGGGTGGAAGgtacgggaaa ... catgtaacagATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGC
EST: GTCACTCAGTGGAACCTCGATTTCACCTCCGACAGTGAACAGGGTGGAAG ATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGC
genomic: GTCACTCAGTGGAACCTCGATTTCACCTCCGACAGTGAACAGGGTGGAAGgtacgggaaa ... catgtaacagATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGC
attttttctcgtcaattccagcacaagttgaacgagtgctttctgcatgtaacagATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGCTTGCGGGCTTACGATCGATCACCCGATCATGACGTCGACTGAGTTTTGG
gtttgat putative branch site (score: 23)
ctttctgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcagtctcttgccgtttcgtagactttaaaagtcgtcctgtttgattttttctcgtcaattccagcacaagttgaacgagtgctttctgcatgtaacagATACAAGGAGCTTGCGAATCGTGTCGACGAGGCTTTGGGATTCATGTCAGCTTGCGGGCTTACGATCGATCACCCGATCATGACGTCGACTGAGTTTTGG
- - -tctcttg
- - - - - - - gtttcgt
- - - - - - - - - - - - - - - - -tcgtcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttc