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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaagcttattttggttctccgcgtctgcattgatcttttctgccttgcagAACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAGTTTGGGAACATCCTCTCGTGCAAGGTGGCCGTGGACAGCAGTGGTCAGT

Basic information

species Selaginella moellendorffii
transcript EFJ24657
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169058134|gb|FE466577.1|FE466577
EST:     ATCGGGACCCCAGCATTCGAAAGAGTGGAATGGCAAACATTTTCATCAAG                         AACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAG
genomic: ATCGGGACCCCAGCATTCGAAAGAGTGGAATGGCAAACATTTTCATCAAGgtacgcaagc ... tgccttgcagAACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAG
EST: gi|169106638|gb|FE506714.1|FE506714
EST:     ATGGCAAACATTTTCATCAAG                         AACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAG
genomic: ATGGCAAACATTTTCATCAAGgtacgcaagc ... tgccttgcagAACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAG
EST: gi|169115697|gb|FE517283.1|FE517283
EST:     ATCGGGACCCCAGCATTCGAAAGAGTGGAATGGCAAACATTTTCATCAAG                         AACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAG
genomic: ATCGGGACCCCAGCATTCGAAAGAGTGGAATGGCAAACATTTTCATCAAGgtacgcaagc ... tgccttgcagAACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAG
EST: gi|169111084|gb|FE513207.1|FE513207
EST:     ATCGGGACCCCAGCATTCGAAAGAGTGGAATGGCAAACATTTTCATCAAG                         AACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAG
genomic: ATCGGGACCCCAGCATTCGAAAGAGTGGAATGGCAAACATTTTCATCAAGgtacgcaagc ... tgccttgcagAACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgcaagcttattttggttctccgcgtctgcattgatcttttctgccttgcagAACCTCGACAAGAGCATCGACAACAAGGCACTGTATGATACTTTCGCGCAGTTTGGGAACATCCTCTCGTGCAAGGTGGCCGTGGACAGCAGTGGTCAGT
                                cattgat  putative branch site (score: 4)
                                      tcttttctgccttgc  CT-rich tract
          ttatttt  TA-rich tract