1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgatacccatgaatacaaaatccgatttttctaatgtttctccgattcttctacagGGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGGAGCTCTCGAGAGACGACGAGAATCGATGCTCACAGAGAGATGGCGGCTC
species | Selaginella moellendorffii |
transcript | EFJ24654 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACAGCAGCGCAAAATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAG GGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGGEST: gi|169109104|gb|FE511306.1|FE511306
genomic: GACAGCAGCGCAAGATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAGgtgataccca ... tcttctacagGGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGG
EST: GACAGCAGCGCAAGATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAG GGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGGEST: gi|169034313|gb|FE443086.1|FE443086
genomic: GACAGCAGCGCAAGATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAGgtgataccca ... tcttctacagGGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGG
EST: GACAGCAGCGCAAGATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAG GGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGGEST: gi|169032597|gb|FE437728.1|FE437728
genomic: GACAGCAGCGCAAGATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAGgtgataccca ... tcttctacagGGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGG
EST: AGCAGCGCAAAATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAG GGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGGEST: gi|169064856|gb|FE475552.1|FE475552
genomic: AGCAGCGCAAGATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAGgtgataccca ... tcttctacagGGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGG
EST: GACAGCAGCGCAAGATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAG GGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGG
genomic: GACAGCAGCGCAAGATTCTCAATCCCGCATTCAAGCTTGCATACTTGAAGgtgataccca ... tcttctacagGGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGG
gatacccatgaatacaaaatccgatttttctaatgtttctccgattcttctacagGGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGGAGCTCTCGAGAGACGACGAGAATCGATGCTCACAGAGAGATGGCGGCTC
ttctaat putative branch site (score: 17)
tttctccgattcttct CT-rich tract
atttttctaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatacccatgaatacaaaatccgatttttctaatgtttctccgattcttctacagGGATTGATGCGGCATATGTCTGGTGCTGGAGAAGATCTGGCCAGGAAATGGAGCTCTCGAGAGACGACGAGAATCGATGCTCACAGAGAGATGGCGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG