1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgatctttgtacttgcggtatgaaaatcaaaactttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG
species | Selaginella moellendorffii |
transcript | EFJ24514 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATTEST: gi|169102451|gb|FE503893.1|FE503893
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATTEST: gi|169059623|gb|FE468857.1|FE468857
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATTEST: gi|169078881|gb|FE489653.1|FE489653
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169060805|gb|FE469220.1|FE469220
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169109252|gb|FE512819.1|FE512819
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: CAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169040256|gb|FE448971.1|FE448971
genomic: CAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169114856|gb|FE516117.1|FE516117
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169103625|gb|FE506822.1|FE506822
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATTEST: gi|169109253|gb|FE512820.1|FE512820
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169053687|gb|FE461506.1|FE461506
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169045016|gb|FE452758.1|FE452758
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169103624|gb|FE506821.1|FE506821
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATTEST: gi|169114855|gb|FE516116.1|FE516116
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169078880|gb|FE489652.1|FE489652
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169040255|gb|FE448970.1|FE448970
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: CAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCG-AGNTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATEST: gi|169053546|gb|FE463315.1|FE463315
genomic: CAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAG-TACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCAT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169060804|gb|FE469219.1|FE469219
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: CAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169053686|gb|FE461505.1|FE461505
genomic: CAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169035320|gb|FE443764.1|FE443764
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATTEST: gi|169045002|gb|FE452757.1|FE452757
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTEST: gi|169102450|gb|FE503892.1|FE503892
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATTEST: gi|169074146|gb|FE481871.1|FE481871
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
EST: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATT
genomic: TCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAGgtatgatctt ... tttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATT
gtatgatctttgtacttgcggtatgaaaatcaaaactttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG
ctttgttcc CT-rich tract
tatgaaaatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatctttgtacttgcggtatgaaaatcaaaactttgttccagGTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG