1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagaatagaagaaagcttcgcgtgcaaccatgtggtttaacttccatttaattctctaaacagGATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACAGGGGATTACACGTTGCAAGAGAGGGTCGACGTCCAAACCGGCATGAAAATGATCCT
species | Selaginella moellendorffii |
transcript | EFJ23966 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCAGATTTTGGTGAAGCTGCCATTGGCCGAGTTGCTCCTGTCGATTCCG GATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACAGGGGATTEST: gi|169021383|gb|FE431174.1|FE431174
genomic: TCCAGATTTTGGTGAAGCTGCCATTGGCCGAGTTGCTCCTGTCGATTCCGgtgagaatag ... ctctaaacagGATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACAGGGGATT
EST: TCCAGATTTTGGTGAAGCTGCCATTGGCCGAGTTGCTCCTGTCGATTCCG GATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACCGGGGATTEST: gi|169025476|gb|FE434946.1|FE434946
genomic: TCCAGATTTTGGTGAAGCTGCCATTGGCCGAGTTGCTCCTGTCGATTCCGgtgagaatag ... ctctaaacagGATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACAGGGGATT
EST: TCCAGATTTTGGTGAAGCTGCCATTGGCCGAGTTGCTCCTGTCGATTCCG GATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACAGGGGATTEST: gi|169070755|gb|FE476288.1|FE476288
genomic: TCCAGATTTTGGTGAAGCTGCCATTGGCCGAGTTGCTCCTGTCGATTCCGgtgagaatag ... ctctaaacagGATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACAGGGGATT
EST: TCCAGATTTTGGTGAAGCTGCCATTGGCCGAGTTGCTCCTGTCGATTCCG GATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACCGGGGATT
genomic: TCCAGATTTTGGTGAAGCTGCCATTGGCCGAGTTGCTCCTGTCGATTCCGgtgagaatag ... ctctaaacagGATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACAGGGGATT
aagaaagcttcgcgtgcaaccatgtggtttaacttccatttaattctctaaacagGATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACAGGGGATTACACGTTGCAAGAGAGGGTCGACGTCCAAACCGGCATGAAAATGATCCT
ttctct CT-rich tract
atttaattctctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaatagaagaaagcttcgcgtgcaaccatgtggtttaacttccatttaattctctaaacagGATTGTGGTGGATTATTCTTTTGAGAGCTTATGGCAAAAGCACAGGGGATTACACGTTGCAAGAGAGGGTCGACGTCCAAACCGGCATGAAAATGATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG