1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtcaagtgtatcctttttttgtttctcttttaataaacggtgttcattattttctgttgtgcagGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAGTCTTTGAGAGGCTGATCGAACCTTTCTGTTCAG
species | Selaginella moellendorffii |
transcript | EFJ23527 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAGATACGAGCTGGCCTGGGAGCTCTTGGATTGAGGCCTCCACCTCCG GGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAEST: gi|169095646|gb|FE498337.1|FE498337
genomic: GAAAGATACGAGCTGGCCTGGGAGCTCTTGGATTGAGGCCTCCACCTCCGgtatgtcaag ... tgttgtgcagGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAA
EST: GAAAGATACGAGCTGGCCTGGGAGCTCTTGGATTGAGGCCTCCACCTCCG GGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAEST: gi|169031921|gb|FE440153.1|FE440153
genomic: GAAAGATACGAGCTGGCCTGGGAGCTCTTGGATTGAGGCCTCCACCTCCGgtatgtcaag ... tgttgtgcagGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAA
EST: GAAAGATACGAGCTGGCCTGGGAGCTCTTGGATTGAGGCCTCCAGCTCCG GGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAEST: gi|169032601|gb|FE438239.1|FE438239
genomic: GAAAGATACGAGCTGGCCTGGGAGCTCTTGGATTGAGGCCTCCACCTCCGgtatgtcaag ... tgttgtgcagGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAA
EST: GAAAGATACGAGCTGGCCTGGGAGCTCTTGGATTGAGGCCTCCACCTCCG GGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAA
genomic: GAAAGATACGAGCTGGCCTGGGAGCTCTTGGATTGAGGCCTCCACCTCCGgtatgtcaag ... tgttgtgcagGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAA
atcctttttttgtttctcttttaataaacggtgttcattattttctgttgtgcagGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAGTCTTTGAGAGGCTGATCGAACCTTTCTGTTCAG
ttttaat putative branch site (score: 10)
ttattttct putative PPT
ttttttgtttctcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcaagtgtatcctttttttgtttctcttttaataaacggtgttcattattttctgttgtgcagGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAGTCTTTGAGAGGCTGATCGAACCTTTCTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT