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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatttttctttcttccctcttttggtgacatgagaagaaaggcaaagcttaaatattgctcgcttccagGGAGAAGAACAAAAGAAGCTGGATGTTCTTTCAAACGAAGTTTTCATCAAGGCACTGTGCAGCAGTGGTCGAGCA

Basic information

species Selaginella moellendorffii
transcript EFJ23220
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23220 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA16G28310.1 (Glycine max), 3'ss of exon 3
-----------------------gtactatttttctttcttccctctt---ttggtgacatgagaagaaaggcaaagcttaaatattgctcgc-ttccagGGAGAAGAACAAAAGAAGCTGGATGTTCTTTCAAACGAAGTTTTCATCAAGGCACTGTGCAGCAGTGGTCGAGCA
                       ||  | | | |   | || | | ||   ||  |    ||     |        | |  | |  || | |  ||  |||| |||||||| ||||| |||||||||||||| || || |||||||||||||| ||    |||||||| ||| ||
agacacggatcacaatttaaaatgttgtgtatgtgaattttgcttatttagttaattgtttgtttttattattttcgttccatttgtgtttggattgaagGGTGAAGAACAGAAGAAACTGGATGTTCTTTCCAATGAGGTTTTCATCAAGGCTCTCATAAGCAGTGGCCGAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169048146|gb|FE456861.1|FE456861
EST:     GCTGGCCTTGCAAAGCTCATTGGACTTGCTGGAGACACAAACATACAG                         GGAGAAGAACAAAAGAAGCTGGATGTTCTTTCAAACGAAGTTTTCATCAAG
genomic: GCTGGCCTTGCAAAGCTCATTGGACTTGCTGGAGACACAAACATACAGgtactatttt ... tcgcttccagGGAGAAGAACAAAAGAAGCTGGATGTTCTTTCAAACGAAGTTTTCATCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctcttttggtgacatgagaagaaaggcaaagcttaaatattgctcgcttccagGGAGAAGAACAAAAGAAGCTGGATGTTCTTTCAAACGAAGTTTTCATCAAGGCACTGTGCAGCAGTGGTCGAGCA
                                            ctcgcttcc  CT-rich tract
                             aaagcttaaatatt  TA-rich tract