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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctttgattccatgctatatatcaaatgttgttttgccttatcgtttgtttgatctatcagGCCGTAGAGAGCGCAGTGAGCCTTGTCAAGGAAGGAGGAATGGATGCAATTAAGCTAGAGGGTGGTAGTGCATCTCGAATCACAGCAGTGAAGGCAATTC

Basic information

species Selaginella moellendorffii
transcript EFJ23081
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23081 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT2G46110.1 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------------gtttgctttgattccatgcta-tatatcaaat-gttgttttgccttatcgtttgtttgatc-tatcagGCCGTAGAGAGCGCAGTGAGCCTTGTCAAGGAAGGAGGAATGGATGCAATTAAGCTAGAGGGTGGTAGTGCATCTCGAATCACAGCAGTGAAGGCAATTC
                                  ||     ||||   ||  | |  | |||||    |   ||  ||   ||||   || |    |||||| || || |  || || ||  || | |||||||||||||||||||| |||||||| || || ||    || ||| | ||||| || |  || || ||  
ttagctttagtacttgcttatgcaaagtagattctttacaagattttgtgtcaatgaaacaaattagggacctgattttgggtttaaatgttggcttcagGCGGTTGATACTGCGGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTAAGCTCGAAGGAGGATCAGCTTCTAGGATCACTGCTGCAAAAGCTATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccatgctatatatcaaatgttgttttgccttatcgtttgtttgatctatcagGCCGTAGAGAGCGCAGTGAGCCTTGTCAAGGAAGGAGGAATGGATGCAATTAAGCTAGAGGGTGGTAGTGCATCTCGAATCACAGCAGTGAAGGCAATTC
                                         gtttgat  putative branch site (score: 5)
         tatatatcaaatgtt  TA-rich tract