1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagttctcacttcttatttagtccttagagattgagatgaagctcttccttgtttctgtcatctagGCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGACTGTCGCAACAAAGAGCAAGTTGTTTTGAGGATGAAAGCCGCTGTTGCCA
species | Selaginella moellendorffii |
transcript | EFJ21647 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTGCATCCCAGTGAGATCGTCGGAGGCTACACGAAAGCCAGCCAGAAG GCACTGGAGATCATCGAACAGCTTGCCGAGCCCGGGTCGGAGACTATGGATEST: gi|169072128|gb|FE479884.1|FE479884
genomic: GCTTGCATCCCAGTGAGATCGTTGGAGGCTACACGAAAGCCAGCCAGAAGgtaagttctc ... tgtcatctagGCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGAC
EST: GCTTGCATCCCAGTGAGATCGTCGGAGGCTACACGAAAGCCAGCCAGAAG GCACTGGAGATCATCGAACAGCTTGCCGAGCCCGGGTCGGAGACTATGGATEST: gi|169034976|gb|FE444837.1|FE444837
genomic: GCTTGCATCCCAGTGAGATCGTTGGAGGCTACACGAAAGCCAGCCAGAAGgtaagttctc ... tgtcatctagGCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGAC
EST: GCTTGCATCCCAGTGAGATCGTTGGAGGCTACACGAAAGCCAGCCAGAAG GCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGACEST: gi|169070715|gb|FE477314.1|FE477314
genomic: GCTTGCATCCCAGTGAGATCGTTGGAGGCTACACGAAAGCCAGCCAGAAGgtaagttctc ... tgtcatctagGCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGAC
EST: GCTTGCATCCCAGTGAGATCGTCGGAGGCTACACGAAAGCCAGCCAGAAG GCACTGGAGATCATCGAACAGCTTGCCGAGCCCGGGTCGGAGACTATGGATEST: gi|169071330|gb|FE479606.1|FE479606
genomic: GCTTGCATCCCAGTGAGATCGTTGGAGGCTACACGAAAGCCAGCCAGAAGgtaagttctc ... tgtcatctagGCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGAC
EST: GCTTGCATCCCAGTGAGATCGTTGGAGGCTACACGAAAGCCAGCCAGAAG GCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGACEST: gi|169034406|gb|FE446377.1|FE446377
genomic: GCTTGCATCCCAGTGAGATCGTTGGAGGCTACACGAAAGCCAGCCAGAAGgtaagttctc ... tgtcatctagGCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGAC
EST: GCTTGCATCCCAGTGAGATCGTTGGAGGCTACACGAAAGCCAGCCAGAAG GCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGAC
genomic: GCTTGCATCCCAGTGAGATCGTTGGAGGCTACACGAAAGCCAGCCAGAAGgtaagttctc ... tgtcatctagGCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGAC
tcttatttagtccttagagattgagatgaagctcttccttgtttctgtcatctagGCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGACTGTCGCAACAAAGAGCAAGTTGTTTTGAGGATGAAAGCCGCTGTTGCCA
ctcttccttgtttctg CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctcacttcttatttagtccttagagattgagatgaagctcttccttgtttctgtcatctagGCACTGGAGATCATCGAACAGCTTGCCGATCCTGGGTCGGAGACTATGGACTGTCGCAACAAAGAGCAAGTTGTTTTGAGGATGAAAGCCGCTGTTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT