1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagccaaaactcctctttttccttcttgtgatagaattttttttcgttgtcagGTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGCCAAATGTCCGGTTTGTGTCGAAGATGTTCCATCCCAACA
species | Selaginella moellendorffii |
transcript | EFJ21576 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCTGACGACACGCCATGGGATGGAG GTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGCEST: gi|169054452|gb|FE460274.1|FE460274
genomic: GCCTGACGACACGCCATGGGATGGAGgtgagccaaa ... tcgttgtcagGTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGC
EST: GCCTGACGACACGCCATGGGATGGAG GTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGCEST: gi|169060609|gb|FE467347.1|FE467347
genomic: GCCTGACGACACGCCATGGGATGGAGgtgagccaaa ... tcgttgtcagGTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGC
EST: GCCTGACGACACGCCATGGGATGGAG GTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGC
genomic: GCCTGACGACACGCCATGGGATGGAGgtgagccaaa ... tcgttgtcagGTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGC
gtgagccaaaactcctctttttccttcttgtgatagaattttttttcgttgtcagGTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGCCAAATGTCCGGTTTGTGTCGAAGATGTTCCATCCCAACA
ttttttttcgttgtc CT-rich tract
tgatagaatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccaaaactcctctttttccttcttgtgatagaattttttttcgttgtcagGTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGCCAAATGTCCGGTTTGTGTCGAAGATGTTCCATCCCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG