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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtcgtctctcgtttctttccagcgctcgatctttcgtatcaacgttgtttcctccagGTGTGGAGATGCCAATCTCATCGACATTCCTGTCGAAATCGAGTGTCCCGATCGACACTTCTACCAC

Basic information

species Selaginella moellendorffii
transcript EFJ20940
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20940 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA03G41020.1 (Glycine max), 3'ss of exon 4
-------------------------------------gtactgtcgtctctcgtttctttccagcgctcgatctttcgt-atcaacgttgtttcctccagGTGTGGAGATGCCAATCTCATCGACATTCCTGTCGAAATCGAGTGTCCCGATCGACACTTCTACCAC
                                       | | |  | | ||  |   | |       | | | ||  | |||   |||  ||  | ||| ||    ||||| |||||||| ||||||||||||||||| ||| |||| ||||  || |  || || 
accaaacataaaattttggcatctttaatggccatgttcagttttatgtttcactgtctactgttcaccaaccattattgatctttgtttgttattgcagATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtctctcgtttctttccagcgctcgatctttcgtatcaacgttgtttcctccagGTGTGGAGATGCCAATCTCATCGACATTCCTGTCGAAATCGAGTGTCCCGATCGACACTTCTACCAC
                                          ttgtttcctcc  CT-rich tract
         tttcttt  TA-rich tract