1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagatcagttcgttttagtgtgttctacgagaacttttctagttcttgttcattccgtgaggctggaactgattttgcgttcttgctctcagGTCAGAATCTCGCTTCGTGTTCTAACACGGCCGATCGCGGACCGTCTCCCGTCGATCTATCGCACCCTGGGACAGGACTACGCGGAGAGGGTCTTGCCTT
species | Selaginella moellendorffii |
transcript | EFJ20024 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTAGACCCAACTTGGTCGAGAGTACTTCTGGCAGCAAGGATCTCCAGATG GTCAGAATCTCGCTTCGTGTTCTAACACGGCCGATCGCGGACCGTCTCCCGEST: gi|169107474|gb|FE504196.1|FE504196
genomic: CTAGACCCAACTTGGTCGAGAGTACTTCTGGCAGCAAGGATCTCCAGATGgtaagatcag ... ttgctctcagGTCAGAATCTCGCTTCGTGTTCTAACACGGCCGATCGCGGACCGTCTCCCG
EST: CTAGACCCAACTTGGTCGAGAGTACTTCTGGCAGCAAGGATCTCCAGATG GTCAGAATCTCGCTTCGTGTTCTAACACGGCCGATCGCGGACCGTCTCCCG
genomic: CTAGACCCAACTTGGTCGAGAGTACTTCTGGCAGCAAGGATCTCCAGATGgtaagatcag ... ttgctctcagGTCAGAATCTCGCTTCGTGTTCTAACACGGCCGATCGCGGACCGTCTCCCG
tctagttcttgttcattccgtgaggctggaactgattttgcgttcttgctctcagGTCAGAATCTCGCTTCGTGTTCTAACACGGCCGATCGCGGACCGTCTCCCGTCGATCTATCGCACCCTGGGACAGGACTACGCGGAGAGGGTCTTGCCTT
aactgat putative branch site (score: 13)
ttcttgctctc putative PPT
tgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatcagttcgttttagtgtgttctacgagaacttttctagttcttgttcattccgtgaggctggaactgattttgcgttcttgctctcagGTCAGAATCTCGCTTCGTGTTCTAACACGGCCGATCGCGGACCGTCTCCCGTCGATCTATCGCACCCTGGGACAGGACTACGCGGAGAGGGTCTTGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG