Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtttggagattctttctaatccaacgtctgtacggttgtcttttacacagGTACCCTTGTACACCCGGAATCTGGACGCAAGAACAAGTAGAGGCCTGGAAACCGATTGTGAAAGCCGTTCATGACAAGGGTGCTGTGTTTTTTCTTCAA

Basic information

species Selaginella moellendorffii
transcript EFJ19876
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ19876 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA06G01950.1 (Glycine max), 3'ss of exon 2
--------------------------------------------gtgagagtttggagattctttctaatccaacgtctgtacggttgtcttttacacagGTACCCTTGTACACCCGGAATCTGGACGCAAGAACAAGTAGAGGCCTGGAAACCGATTGTGAAAGCCGTTCATGACAAGGGTGCTGTGTTTTTTCTTCAA
                                            |  | |   |  | ||      |    |  |   | |   |||  |  |   | ||||||||   |||||| ||||| |||||   ||||||||| || || |||||||| ||||||| |||||||||||| || || |   | || |||   |||
caacggaaaaacaaacacctaattattttactttcactttcaatggaaaaaaataaaaatctcaagtctctctgcccattttttgtttaccatattaaagGTACCCAAATACACCAGGAATTTGGACAAGAGAACAAGTGGAAGCATGGAAACCAATTGTGAGAGCCGTTCATGAAAATGGGGGCATATTCTTTTGCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagagtttggagattctttctaatccaacgtctgtacggttgtcttttacacagGTACCCTTGTACACCCGGAATCTGGACGCAAGAACAAGTAGAGGCCTGGAAACCGATTGTGAAAGCCGTTCATGACAAGGGTGCTGTGTTTTTTCTTCAA
                  ttctaat  putative branch site (score: 2)
                                        ttgtctttt  putative PPT
                 tttctaat  TA-rich tract