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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttgtggggaatctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

Basic information

species Selaginella moellendorffii
transcript EFJ19598
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 3'ss of exon 3
gtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttgtggggaatctgaaaa--aatttgc-------------actttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
|| ||   |  |||| ||    |     |  |  | | || | |  || |   ||    |||| |             ||| | ||||| ||||||||||||||  ||||||||||    ||||| ||||| |||||||||||||||||||| ||||| || ||||||||  |||| || |||||||
gtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAGCACTACACCAAGGACTTTGGCATTGAGTGCCGTGTTGGCCGCTTCCACA

upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 3
gtatgaaaaagaaaaaaaaaaaaaaaacttcttctct-----tttgtgggg---aatctgaaaaaatttg----cactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
|| ||   |   ||| | ||  |    | | ||   |     | | |   |   ||||| ||     | |     || || ||||| ||||||||||||||  ||||||||||    || || |||||||||||||||||||||||||| ||||| |||||||||||| | || || |||||||
gtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACA

upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
-----------------------------gtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttgtggggaat--------ctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
                             |   |    ||     |   |    | ||    ||       |   |||        |||||   ||    | |||  |||| |||||||||||||| ||||| || ||    ||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||| || || ||||
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA

upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA03G40720.1 (Glycine max), 3'ss of exon 3
-----------------------------gtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttgtggggaatctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
                               | |  |        |   |   |||  |  |     | |  ||||       ||  ||||   |||  |||| |||||||| ||||| |||||||||||    || |||||| | |||||||| || | |||||||||||| || ||||||||||||||  ||||||| |
gtatgttgctgattctttgaattacttgttcaagttattctggttattcacttaaaaatacttaggctagcagggatatatttaatttttgacttttatagCCACAAGATGCATATGGGCTGGAGAAGCTTGCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGATTCCATA

upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA19G43400.1 (Glycine max), 3'ss of exon 3
------------------------------gtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttgtggggaatctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
                                |   |        |   |    ||| | |||   ||    |||  || |  || | ||  |  |||  |||| |||||||| ||||| |||||||||||    || |||||| | |||||||| || | |||||||||||| || |||||||| |||||  ||||||| |
gtttgttgctgattcttttaattagttgttcaacttattctggttattcacttgaaaatacttaggttagcagggatatatttaatatttgactttttatagCCACAAGATGCATATGGGCTGGAGAAGCTTGCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGGATTGGGAGATTCCATA

upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA20G36740.2 (Glycine max), 3'ss of exon 3
--------------gtatgaaaaagaaaaaaaaaaaaaaaactt---cttctcttttg---tgggg--aatctgaaaaaatttgcac---tttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
               | | ||      ||   |        |||    ||| | || |   ||||   ||| ||   || ||||      |||  |||| |||||||| ||||| || ||||||||    || || ||  | ||||||||||| | |||||||||||| || ||||||||||||||  | |||||||
gtttgttggtgatcttttcaattgttcaatttatgttggttcttgattttcacattgggattgggattaatgtgtttaattttgtgactgtttttagCCACAAGATGCATATGGGCTAGAGAAGCTTGCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACA

upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA10G30400.1 (Glycine max), 3'ss of exon 2
--------------gtatgaaaaagaaaaaaaaaaaaaaaactt---cttctcttttg---tgggg--aatctgaaaaaatttgca---ctttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
               | ||||      ||   |        |||    ||| | || |   ||||   ||| ||   || ||||      |||  |||| |||||||| ||||| || ||||| ||    || || ||  | ||||||||||| | |||||||||||| || ||||||||||||||  | |||||||
gttagttggtgatcttttgaattgttcaatttatgttggttcttgattttcacattgggattgggattaatttgtttaattttgtgactttttttagCCTCAAGATGCATATGGGCTAGAGAAACTTGCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACA

upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 3'ss of exon 3
---------------gtatgaaaaagaaaaaaaaaaaaaaaacttcttctct--tttgtggggaatctgaaaaaatttgcactt---tgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
                ||| ||||| |  |     ||| | | |  ||      ||  |||   | ||||  |  |||   |||   |  |||| ||||||||||||||  | ||||||||    ||||| ||| | |||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||| |
gtttttcctctaatcttataaaaaatatcagttctaaatatattcatttgaggattattggcataactgatgagctttttgcttttgtttagCCTCAAGATGCCTATGGCTTAGAGAAGCTCGCAACTGAGGAGTTATGCAAGCACTACACTAAGGACTTTGGAATTGAGTGTCGCATTGGACGGTTCCATA

upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
--------------------gtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttg-tggggaatctga--------aaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
                    |  ||     |            |   |  |  | || |   ||  || ||| |        |||  | | | |   ||||||||||||||| || || ||||||||||||  ||| || ||||||||||||||||||| |||||| || || || ||||||||||| |  || |||||||
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgccc-gcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA

upper sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------gtatgaaaaagaaaaaaaaaaaaaaaacttcttctc-----ttttgtgg---ggaatctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
                    ||    |  ||        || |   | | |||  |     |||| |||   ||    ||| ||  |       | ||||||||||||||| || || || || ||| ||  ||| || ||| ||||||| || ||||| ||||| ||||| || |||||||||||||| || || ||||
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaaaaacttcttctcttttgtggggaatctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA
                             aatctgaaaaaattt  TA-rich tract