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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaattttatttctcatttttattcttcgttgtttgatttgaactaatgagtcgcctttgcagGTACATGGGATTGGAAATGATTAAGCAGGCTTAAATTTCATTGTGCTTTACTTGATTATACTTACTTAATACTCTGTAATATGCATCAACACATTCAT

Basic information

species Selaginella moellendorffii
transcript EFJ19108
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169031875|gb|FE438508.1|FE438508
EST:     GATTTCTCTCCAGGGACGAATCCTCAGTCGACTTTCATGATGTTAGCAAG                         GTACATGGGATTGGAAATGATTAAGCAGGCTTAAATTTCATTGTGCTTTAC
genomic: GATTTCTCTCCAGGGACGAATCCTCAGTCGACTTTCATGATGTTAGCAAGgtacaatttt ... gcctttgcagGTACATGGGATTGGAAATGATTAAGCAGGCTTAAATTTCATTGTGCTTTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctcatttttattcttcgttgtttgatttgaactaatgagtcgcctttgcagGTACATGGGATTGGAAATGATTAAGCAGGCTTAAATTTCATTGTGCTTTACTTGATTATACTTACTTAATACTCTGTAATATGCATCAACACATTCAT
                                 aactaat  putative branch site (score: 2)
                                           tcgccttt  putative PPT
     tcatttttattctt  TA-rich tract