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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaacttattctccattctatcctgggataaccttgttgaattttgctcctttactttcttagatgtcttcacagATGCCATCCAAAGACCACGATGAGATTGACTTTGAGTTCTTGGGAAACACCAGCGGGCAACCTTACATTGTCCACACCAACATCTTTGCAAACGGAACAG

Basic information

species Selaginella moellendorffii
transcript EFJ18918
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ18918 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA02G07610.1 (Glycine max), 3'ss of exon 2
gtaagaaaacttattctccattctatcctgggataaccttgttgaattttgctcc----tttac-----------tttcttagatgt--------cttcacagATGCCATCCAAAGAC------CACGATGAGATTGACTTTGAGTTCTTGGGAAACACCAGCGGGCAACCTTACATTGTCCACACCAACATCTTTGCAAACGGAACAG
|||||||||   ||||||  || | |  |    |  |  |    | || |  |||    |||             ||  || | |||        ||   ||| |  |||||| | ||      || ||||| || ||||||||||||||||||||||  | |||||||||||||||| | || || ||  | ||  |    |      
gtaagaaaaacaattctctgttttgttttcaagtttctctaccaatttgttttcccagttttgttatgtgaccctttctttggctgtgattggcactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTACATTTTGCAAACTAATGTGTTCACTGGTG------

upper sequence: EFJ18918 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA16G26630.1 (Glycine max), 3'ss of exon 2
gtaagaaaacttattctccattctatcctgggataaccttg---------------------ttgaattttgctcctttactttct---------tagatgtcttcacagATGCCATCCAAAGAC------CACGATGAGATTGACTTTGAGTTCTTGGGAAACACCAGCGGGCAACCTTACATTGTCCACACCAACATCTTTGCAAACGGAACAG
|||||||||   ||||||  || | |  || | |    |                        | | ||||| |   | ||| | |         |   || |    ||| |  |||||| | ||      || ||||| || ||||||||||||||||||||||  | |||||||||||| ||| | || || ||  | ||  |    |      
gtaagaaaaacaattctctgttttgttttgtgttggtttcaagttttccaccaatttgttttctcagttttgttatgtgactctttctttggctgtgattggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTATATTTTGCAAACAAATGTGTTCACCGGTG------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgggataaccttgttgaattttgctcctttactttcttagatgtcttcacagATGCCATCCAAAGACCACGATGAGATTGACTTTGAGTTCTTGGGAAACACCAGCGGGCAACCTTACATTGTCCACACCAACATCTTTGCAAACGGAACAG
     ggataac  putative branch site (score: 3)
                                            tgtcttc  putative PPT
                ttgaatttt  TA-rich tract