1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactacttttcatcttgatcttctttaatcgttctgagcggccggaattttttttttatgcaacagGTGGCAAAGGAGAGCGCTGATATAGTTATTCTAGACGACAAGTTCAACACTATAGTGGTGGTAGCAAAATGGGGCCGCTCGGTCTACACAAACATCCAAA
species | Selaginella moellendorffii |
transcript | EFJ18007 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTACATGAAGCAGACGTTGGCTTAGCCATGGGAATTTCTGGAACGGAG GTGGCAAAGGAGAGCGCTGATATAGTTATTCTAGACGACAAGTTCAACACTEST: gi|169018546|gb|FE428083.1|FE428083
genomic: CTTTACATGAAGCAGACGTTGGCTTAGCCATGGGAATTTCTGGAACGGAGgtactacttt ... tatgcaacagGTGGCAAAGGAGAGCGCTGATATAGTTATTCTAGACGACAAGTTCAACACT
EST: CTTTACATGAAGCAGACGTTGGCTTGGCCATGGGAATTGCTGGAACGGAG GTAGCAAAGGAGAGCGCTGATATAGTTATTCTAGACGACA
genomic: CTTTACATGAAGCAGACGTTGGCTTAGCCATGGGAATTTCTGGAACGGAGgtactacttt ... tatgcaacagGTGGCAAAGGAGAGCGCTGATATAGTTATTCTAGACGACA
atcttgatcttctttaatcgttctgagcggccggaattttttttttatgcaacagGTGGCAAAGGAGAGCGCTGATATAGTTATTCTAGACGACAAGTTCAACACTATAGTGGTGGTAGCAAAATGGGGCCGCTCGGTCTACACAAACATCCAAA
ctttaat putative branch site (score: 44)
ttttttttttatgc putative PPT
aattttttttttatgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacttttcatcttgatcttctttaatcgttctgagcggccggaattttttttttatgcaacagGTGGCAAAGGAGAGCGCTGATATAGTTATTCTAGACGACAAGTTCAACACTATAGTGGTGGTAGCAAAATGGGGCCGCTCGGTCTACACAAACATCCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG