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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatattatcaattcttttctaccacataactttctcttctcttttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAAATCGATTTTTTTGTTTCGGGGATTGGAACTGGCGGTACTGTGACTGGTG

Basic information

species Selaginella moellendorffii
transcript EFJ17923
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169104263|gb|FE503703.1|FE503703
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169062207|gb|FE469721.1|FE469721
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169055710|gb|FE465328.1|FE465328
EST:     TGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: TGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169105858|gb|FE505180.1|FE505180
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169056758|gb|FE465985.1|FE465985
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169040531|gb|FE449246.1|FE449246
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169056757|gb|FE465984.1|FE465984
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagatattatcaattcttttctaccacataactttctcttctcttttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAAATCGATTTTTTTGTTTCGGGGATTGGAACTGGCGGTACTGTGACTGGTG
                          acataac  putative branch site (score: 3)
              ttcttttctaccacat  CT-rich tract
     tattatcaattctttt  TA-rich tract