1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgtgcgctctagtagctgagctagatcactgacgatcaatttggagctcttcttgacagTCTCATCCAGAGAATACTGTGGGGATTTTAACGACTGGGGGCAAAGGAGTGCGCGTGCTCGTCACGCCAACGACGGACTTGGGCAAGATCCTTTCGTGTA
species | Selaginella moellendorffii |
transcript | EFJ17485 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCAGTCCCAAGCCGATGCTGTCAATCTTATCTGTGGCTCCAAAACGCAG TCTCATCCAGAGAATACTGTGGGGATTTTAACGACTGGGGGCAAAGGAGTGEST: gi|169039494|gb|FE449169.1|FE449169
genomic: TCCAGTCCCAAGCTGATGCTGTCAATCTTATCTGTGGCTCCAAAACGCAGgtttgtgcgc ... ttcttgacagTCTCATCCAGAGAATACTGTGGGGATTTTAACGACTGGGGGCAAAGGAGTG
EST: TCCAGTCNCAAGCCGATGCTGTCAATCTTATCTGTGGCTCCAAAACGCAG TCTCATCCAGAGAATACTGTGGGGATTTTAACGACTGGGGGCAAAGGAGTG
genomic: TCCAGTCCCAAGCTGATGCTGTCAATCTTATCTGTGGCTCCAAAACGCAGgtttgtgcgc ... ttcttgacagTCTCATCCAGAGAATACTGTGGGGATTTTAACGACTGGGGGCAAAGGAGTG
cgctctagtagctgagctagatcactgacgatcaatttggagctcttcttgacagTCTCATCCAGAGAATACTGTGGGGATTTTAACGACTGGGGGCAAAGGAGTGCGCGTGCTCGTCACGCCAACGACGGACTTGGGCAAGATCCTTTCGTGTA
cactgac putative branch site (score: 18)
ctcttctt putative PPT
atcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgcgctctagtagctgagctagatcactgacgatcaatttggagctcttcttgacagTCTCATCCAGAGAATACTGTGGGGATTTTAACGACTGGGGGCAAAGGAGTGCGCGTGCTCGTCACGCCAACGACGGACTTGGGCAAGATCCTTTCGTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA