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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttcatttgtactcacactacatgcaaacgagcaaagcagGCAAGGGAGCGAGCCATCCCAGGCTGTTGTTGCATCGGGTTCACACACGGATGCTATTCCTTACGCTGGGAAATATGACGGCGTCGTTGGTGTTGTAGGC

Basic information

species Selaginella moellendorffii
transcript EFJ17376
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17376 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv05s0020g04900.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------------------------gtaagcttcatttgtactcacactacatgcaa--acgagcaaagcagGCAAGGGAGCGAGCCATCCCAGGCTGTTGTTGCATCGGGTTCACACACGGATGCTATTCCTTACGCTGGGAAATATGACGGCGTCGTTGGTGTTGTAGGC
                                                      | | ||  || ||  |   | || |||   |   |     | ||||| ||||    ||||||   |   ||| ||||||| | ||||| ||||  ||||||||||| ||| ||||||||||||| || ||||| |||||| | || 
ttaggtcacattatttaattctttgctattgtttccattagttttcttcttgtttcaactgtatctgatcaagctcttcatcttatttccctttatgcagGGAAGGTTATGAGCCAGAGCTTACTGCTGTTGCAACAGGTTCTCACATTGATGCTATTCCATACTCTGGGAAATATGATGGGGTCGTCGGTGTTTTGGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagcttcatttgtactcacactacatgcaaacgagcaaagcagGCAAGGGAGCGAGCCATCCCAGGCTGTTGTTGCATCGGGTTCACACACGGATGCTATTCCTTACGCTGGGAAATATGACGGCGTCGTTGGTGTTGTAGGC
                        tactcac  putative branch site (score: 1)
                          ttcattt  TA-rich tract