1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtagagccggattttgctcctgtttatgttttcctgaaccgcgctgtttcttttttggtcagctttgatattaagcagtttcttgttttttatttcgtagATTGTAAGGCCGAAAGGAAGATCCAGCTTTCGTCAAGGGGATGTTATAGCAGACGGGGCCGTGATCCGCTTGCAACATATGCGAACACGGAAATGGCTTC
species | Selaginella moellendorffii |
transcript | EFJ17205 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gtttcttttttggtcagctttgatattaagcagtttcttgttttttatttcgtagATTGTAAGGCCGAAAGGAAGATCCAGCTTTCGTCAAGGGGATGTTATAGCAGACGGGGCCGTGATCCGCTTGCAACATATGCGAACACGGAAATGGCTTC
ctttgat putative branch site (score: 5)
tttcttgttttttatt putative PPT
tttcttgttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagagccggattttgctcctgtttatgttttcctgaaccgcgctgtttcttttttggtcagctttgatattaagcagtttcttgttttttatttcgtagATTGTAAGGCCGAAAGGAAGATCCAGCTTTCGTCAAGGGGATGTTATAGCAGACGGGGCCGTGATCCGCTTGCAACATATGCGAACACGGAAATGGCTTC
- - - - - -ttttgct
- - - - - - - - - - tgtttat
- - - - - - - - - - - - - - ttttcct
- - - - - - - - - - - - - - - - - - - - - - -gtttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagctt