1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcaagcggctctcctcccccggggtttgattgatcggtcgttagATCGCCAGAGTCGCAGGCGCTCGGGAAGGGCTTGCCGCCGCTGCAAGTGGCGAAGAAGAGATCGTCGTCCAGCAGCAGCTCCAGCGCTAATCCAGATGTG
species | Selaginella moellendorffii |
transcript | EFJ17197 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGCGCTGGGCGATTTCAAGCCGGCGGATGCTCCATC-T---- -TCG--AGAGTCGCAGGCGCTCGGGAAGGGCTTGCCGCCGCTGCAAGTGGCEST: gi|169054299|gb|FE460744.1|FE460744
genomic: GTGCGCTGGGCGATTTCAAGCCGGCGGATGCTCCATCTTCGAGgtaagcaagc ... cggtcgttagATCGCCAGAGTCGCAGGCGCTCGGGAAGGGCTTGCCGCCGCTGCAAGTGGC
EST: GTGCGCTGGGCGATTTCAAGCCGGCGGATGGTCCATCTTCGAG ATCGCCAGAGTCGCAGGCGCTGGGGAAGGGCTTGCCGCCGCTGCAAGTGGCEST: gi|169035603|gb|FE445373.1|FE445373
genomic: GTGCGCTGGGCGATTTCAAGCCGGCGGATGCTCCATCTTCGAGgtaagcaagc ... cggtcgttagATCGCCAGAGTCGCAGGCGCTCGGGAAGGGCTTGCCGCCGCTGCAAGTGGC
EST: GTGCGCTGGGCGATTTCAAGCCGGCGGATGCTCCATCTTCGAG ATCGCCAGAGTCGCAGGCGCTCGGGAAGGGCTTGCCGCCGCTGCAAGTGGC
genomic: GTGCGCTGGGCGATTTCAAGCCGGCGGATGCTCCATCTTCGAGgtaagcaagc ... cggtcgttagATCGCCAGAGTCGCAGGCGCTCGGGAAGGGCTTGCCGCCGCTGCAAGTGGC
gtaagcaagcggctctcctcccccggggtttgattgatcggtcgttagATCGCCAGAGTCGCAGGCGCTCGGGAAGGGCTTGCCGCCGCTGCAAGTGGCGAAGAAGAGATCGTCGTCCAGCAGCAGCTCCAGCGCTAATCCAGATGTG
gattgat putative branch site (score: 6)
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaagcggctctcctcccccggggtttgattgatcggtcgttagATCGCCAGAGTCGCAGGCGCTCGGGAAGGGCTTGCCGCCGCTGCAAGTGGCGAAGAAGAGATCGTCGTCCAGCAGCAGCTCCAGCGCTAATCCAGATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG