1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtactcttgtaaagtgggttcgagtgtgctgctaagctttatgctttctagGCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT
species | Selaginella moellendorffii |
transcript | EFJ17159 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGA GCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCEST: gi|169049553|gb|FE457723.1|FE457723
genomic: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGAgtaagtactc ... tgctttctagGCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGC
EST: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGA GCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCEST: gi|169045760|gb|FE451187.1|FE451187
genomic: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGAgtaagtactc ... tgctttctagGCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGC
EST: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGA GCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCEST: gi|169088109|gb|FE493361.1|FE493361
genomic: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGAgtaagtactc ... tgctttctagGCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGC
EST: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGA GCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCEST: gi|169115458|gb|FE516199.1|FE516199
genomic: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGAgtaagtactc ... tgctttctagGCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGC
EST: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGA GCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCEST: gi|169070814|gb|FE480650.1|FE480650
genomic: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGAgtaagtactc ... tgctttctagGCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGC
EST: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGA GCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGC
genomic: TAAAGCGATCAAAGCCTTTTCTTTTTACGACCGGCCAGGTTCTTGTTTGAgtaagtactc ... tgctttctagGCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGC
gtaagtactcttgtaaagtgggttcgagtgtgctgctaagctttatgctttctagGCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT
tgctttct CT-rich tract
ttgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactcttgtaaagtgggttcgagtgtgctgctaagctttatgctttctagGCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA