Sequence
atgc intronic sequence ATGC exonic sequencegtactatttgatatagaaaagcagaaatattgagttcaattacagGTTGAGAACCAAGAAGGATTAGTAAACTTCGATGACATATTGAGAGAAACAGACGGGATAATGGTAGCGCGAGGAGACCTTGGAATGGAAATTCCAATTG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ16690 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ16690 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S124_70V6.2 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------------------gtactatttgatatagaaaagcagaaatattgagttcaattacagGTTGAGAACCAAGAAGGATTAGTAAACTTCGATGACATATTGAGAGAAACAGACGGGATAATGGTAGCGCGAGGAGACCTTGGAATGGAAATTCCAATTG
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ggttttactcagtatgagacaggtttaaaattatgtgattctgcctctattcaaagaatcacaaaattgtgtcttgatcctgctttgatttctaccatagGTTGAGAATCAGGAAGGTCTGGTGAACTTCGATGACATATTGAAAGAGACAGACGGAGTCATGGTGGCAAGAGGGGACCTGGGAATGGAGATTCCTACGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtactatttgatatagaaaagcagaaatattgagttcaattacagGTTGAGAACCAAGAAGGATTAGTAAACTTCGATGACATATTGAGAGAAACAGACGGGATAATGGTAGCGCGAGGAGACCTTGGAATGGAAATTCCAATTG
atttgat putative branch site (score: 5)
tatttgatatagaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactatttgatatagaaaagcagaaatattgagttcaattacagGTTGAGAACCAAGAAGGATTAGTAAACTTCGATGACATATTGAGAGAAACAGACGGGATAATGGTAGCGCGAGGAGACCTTGGAATGGAAATTCCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA