Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtttcttcttttttgtttcatatccttcatgaaacttacgttgtttcttccttcgttttttttttttttttcccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTGGAGCAATCGAGTTTAAGATGGACGAGTGGGGAGTGGACGTTGCCTTGAC

Basic information

species Selaginella moellendorffii
transcript EFJ15151
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169019655|gb|FE427991.1|FE427991
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|70670195|gb|DN838772.1|DN838772
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169102784|gb|FE508100.1|FE508100
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169114563|gb|FE516633.1|FE516633
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169044858|gb|FE451963.1|FE451963
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169052820|gb|FE461198.1|FE461198
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169073069|gb|FE483719.1|FE483719
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169025530|gb|FE435000.1|FE435000
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169113195|gb|FE514441.1|FE514441
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169112652|gb|FE509425.1|FE509425
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169030414|gb|FE438670.1|FE438670
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169077709|gb|FE485387.1|FE485387
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169052103|gb|FE463224.1|FE463224
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169112725|gb|FE515101.1|FE515101
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169036992|gb|FE446058.1|FE446058
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169107738|gb|FE511461.1|FE511461
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169108139|gb|FE512512.1|FE512512
EST:     GAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: GAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169115603|gb|FE517813.1|FE517813
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169075271|gb|FE483529.1|FE483529
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169103253|gb|FE505631.1|FE505631
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169054673|gb|FE461613.1|FE461613
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169103671|gb|FE506868.1|FE506868
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169075996|gb|FE482863.1|FE482863
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169105004|gb|FE505885.1|FE505885
EST:     CAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: CAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169105005|gb|FE505886.1|FE505886
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169070622|gb|FE478846.1|FE478846
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169093294|gb|FE492676.1|FE492676
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169064861|gb|FE475557.1|FE475557
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169103588|gb|FE508956.1|FE508956
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169038739|gb|FE447467.1|FE447467
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169066515|gb|FE474101.1|FE474101
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169098473|gb|FE500167.1|FE500167
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169044387|gb|FE453325.1|FE453325
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169054674|gb|FE461614.1|FE461614
EST:     CCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: CCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169103670|gb|FE506867.1|FE506867
EST:     ACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: ACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169069696|gb|FE477036.1|FE477036
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169060858|gb|FE469253.1|FE469253
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169050537|gb|FE458903.1|FE458903
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169113218|gb|FE515192.1|FE515192
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169110100|gb|FE511586.1|FE511586
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169064843|gb|FE475539.1|FE475539
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169062273|gb|FE470463.1|FE470463
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169109129|gb|FE511331.1|FE511331
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169039552|gb|FE449942.1|FE449942
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169087240|gb|FE495722.1|FE495722
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169115602|gb|FE517812.1|FE517812
EST:     TACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: TACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169114564|gb|FE516634.1|FE516634
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169071829|gb|FE478116.1|FE478116
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169108140|gb|FE512513.1|FE512513
EST:     ACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: ACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169112804|gb|FE515180.1|FE515180
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169062305|gb|FE470495.1|FE470495
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169093295|gb|FE492677.1|FE492677
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|70670215|gb|DN838792.1|DN838792
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169059525|gb|FE468551.1|FE468551
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169037463|gb|FE445528.1|FE445528
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169070584|gb|FE479861.1|FE479861
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169113227|gb|FE515500.1|FE515500
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169029590|gb|FE436780.1|FE436780
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169101528|gb|FE501501.1|FE501501
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169054642|gb|FE461582.1|FE461582
EST:     AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169094121|gb|FE496101.1|FE496101
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169103111|gb|FE506308.1|FE506308
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169040697|gb|FE447332.1|FE447332
EST:     CGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: CGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169046798|gb|FE455033.1|FE455033
EST:     AACTTCTACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: AACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
EST: gi|169066514|gb|FE474100.1|FE474100
EST:     ACCGGAGTTACCAATAGCATCCCATCGATACGAGCACTCCTCG                         ATAAGCATAGGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG
genomic: ACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 138

GCCATGGATTATAATCACGAGATCAAAGCTATATGTATCGTCCACAATGAAACTTCTACCGGAGTTACCAACAGCATCCCATCGATACGAGCACTCCTCGgttcgtttct ... cccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTGGAGCAATCGAGTTTAAGATGGACGAGTGGGGAGTGGACGTTGCCTTGAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgaaacttacgttgtttcttccttcgttttttttttttttttcccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTGGAGCAATCGAGTTTAAGATGGACGAGTGGGGAGTGGACGTTGCCTTGAC
      aacttac  putative branch site (score: 138)
              ttgtttcttccttcgt  CT-rich tract
                             tttttttttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgtttcttcttttttgtttcatatccttcatgaaacttacgttgtttcttccttcgttttttttttttttttcccttactagATAAGCATAAGCATCCGGCATTGCTGCTGGTGGACGGAGTTTCATCGATTGGAGCAATCGAGTTTAAGATGGACGAGTGGGGAGTGGACGTTGCCTTGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA