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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtagtataattctttctttgttcccatgtcttttgtttctcttgcgtcatagaatctccactccgagaatctgggaagagctcaatttagtcttttttgctccattttccagGGTGGTGGAAGAGGCCCGAGTATTTGATCAACGAGCTCAACATCAACTCGGTTATCACCACTCCCGCGCACGGCGACAGCCTGCCCATCAATCCGGTGTC

Basic information

species Selaginella moellendorffii
transcript EFJ14822
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os08g36480.1 (Oryza sativa), 3'ss of exon 1
gtcagtagtataattctttctttgttcccatgtcttttgtttctcttgcgtcatagaatctccactccgaga-atctgggaagagctcaatttagtcttttttgctcca---ttttccagGGTGGTGGAAGAGGCCCGAGTATTTGATCAACGAGCTCAACATCAACTCGGTTATCACCACTCCCGCGCACGGCGACAGCCTGCCCATCAATCCGGTGTC--
       |||   |  || |  |     |||| | | |||    |     | |  |    | ||  |  | |  | ||    ||| | | ||  | ||   | |  | |    |   ||| ||||||| | | ||| |||||  | ||||||||||| ||| | |||||||| ||||| || |||| ||||| ||| | ||||||||||||  |||  ||  
-------gtaacgtatttaccattcattcatg-catgtgtaaaacacattttaccg----ttcatgcgaatatgtatgtactgagttgagttctgactcgatcgaacaaatgctcatcagCGTGGTGGTACAAGCCAGAGTACATCATCAACGAGCTGAACGTGAACTCGGTGATCACGACGCCCGGGCACGACGAGATCCTGCCCATCAA--CGGCATCAC

upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G428027_T01 (Zea mays), 3'ss of exon 1
-----------------gtcagtagtataattctttctttgttcccatgtcttttgtttctcttgcgtcatagaatctccactccgagaatctggg---aagagctcaatttagtcttttttgctccattt--tccagGGTGGTGGAAGAGGCCCGAGTATTTGATCAACGAGCTCAACATCAACTCGGTTATCACCACTCCCGCGCACGGCGACAGCCTGCCCATCAATCCGGTGTC
                  ||  | |     |   |  |    | |  | |||||  ||  ||| |   |  |    | | |  |  ||  | || |     | |      |  || | |||||     |||  | ||| ||||||| |  |||| |||||  | || ||||||||||||||||||||||| |||||||| || |  |||| |||    |||||||||||  |  || |
gtatgttatgtatctgcctcgctcgctcgctcgctcatcaaatacggtctctttgtttcttctggacgccgacgtgcgcaaggctaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgaatggtttcgtgcagCGTGGTGGTACCGGCCGGAGTACATAATAAACGAGCTCAACATCAACTCGGTGATCACCACGCCGGGACACGACGAGGTGCTGCCCATCAACGCCCTGAC

upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM5G878558_T01 (Zea mays), 3'ss of exon 1
gtcagtagtataattctttctttgttcccatgtcttttgtttctcttgcgtcatagaatctccactccgagaatctgggaagagctcaatttagtcttttttgctccattttccagGGTGGTGGAAGAGGCCCGAGTATTTGATCAACGAGCTCAACATCAACTCGGTTATCACCACTCCCGCGCACGGCGACAGCCTGCCCATCAATCCGGTGTC
                       |||   |  ||  |   |  | |||  || |    || |||    | |     | || ||    |||  |    | ||  |||  || | ||| ||||||| | | ||| ||||   |||| |||||||| |||||||||||||| |||||||| || |  |||| |||    |||||||||||  |  |  |
-----------------------gtttgtacatcggtc--tagttttgtttcctctgctcgccaacgtgtgcgagggcgacgacgctaataaa----tgttctctctgttgtacagCGTGGTGGTACAAGCCGGAGTGCATGATAAACGAGCTGAACATCAACTCGGTGATCACCACACCAGGACACGACGAGGTGCTGCCCATCAACGCCCTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactccgagaatctgggaagagctcaatttagtcttttttgctccattttccagGGTGGTGGAAGAGGCCCGAGTATTTGATCAACGAGCTCAACATCAACTCGGTTATCACCACTCCCGCGCACGGCGACAGCCTGCCCATCAATCCGGTGTC
                                 tcttttttgctccatt  CT-rich tract
                          aatttagtctttttt  TA-rich tract