Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT

Basic information

species Selaginella moellendorffii
transcript EFJ14726
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 3
--------gtgaattcgtcggcatttgagctttgctgttt----gttctaagat-ttgcagtg----------------cagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
        ||||   |   |   |||     || |||||     ||  |||||| ||    |                 ||||||||||| ||||||||||||||||||||||| || ||||||||| | || ||||||||||||||||| || ||||   |    ||||| ||||| ||  
gtaatatcgtgaggcctctgatgtttcctaattactgttacctagtcttaagatgttaacatatctctctcctttttctcagGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 3
------------------------gtgaattcgtcggcatttgagctttgctgtttgtt------ctaagatttgcag----tgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                         ||| ||| ||  |  |   ||| |    |  |||      ||||| ||  | |    | ||||||||||| |||||||| ||||||||||||||||| ||||||||| | || ||||| ||||||||||| || || |   |    ||||| ||||| ||  
gtaatttctttggcaatttgctccatga-ttcttcaactgtcttgctatttaatgagttggatgactaagtttgtctgtttgtacagGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 3
-------------------------------gtgaattcgtcggcatttgagctttgctgtt--tgttctaagatt---tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                ||| |    | |  ||    |||   | |   |||  || | ||   ||   ||||||| ||||| || |||||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||  | |   |    ||||| || || ||| 
gtaaactttgggatgacttatttcttgatccatgactcttgctgatttcatacttaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
-------------------------------------------------------gtgaattcgtcggcatttgagctttgctgt-ttgttctaagat------ttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                                        ||| |    | |  ||    |||     | | | | | | ||      |||   ||||||| ||||| || |||||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||  | |   |    ||||| || || ||| 
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G054136_T05 (Zea mays), 3'ss of exon 3
----------------------------------------gtgaattcgtcggcatttgagctttgctgt-ttgttctaagat------ttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                         ||| |    | |  ||    |||     | | | | | | ||      |||   ||||||| ||||| || |||||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||  | |   |    ||||| || || ||| 
ctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 3
-------------------------------gtgaattcgtcggcatttgagctttgctgt-ttgttctaagat------ttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                ||| |    | |  ||    |||     | | | | | | ||      |||   ||||||| ||||| || |||||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||  | |   |    ||||| || || ||| 
gtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 5
------------------------------------------gtgaattcgtcggcatttgagctttgctgtt--tgttctaag---atttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                           ||| |    | |   |    |||   | |   |||  || |    ||||   ||||||| ||||| || |||||||||||||||||||| |||||||||||| | || ||||| |||||||| || ||  | |   |    ||||| ||||| ||| 
gagttgaatttacaaactttgggatgacttatttcttgatccatgactcttgctgatgtcatacttaaatataggtgtgatatgttcctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGGTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGCCTTCTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
-------------------------------gtgaattcgtcggc--atttgagctttgctgtttgttctaagat----ttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                ||    |    ||  |||| |   ||  |  | | | | |  |     |    ||||||| || || || |||||||||||||||||||| |||||||||||  | |||||||| |||||||| || || || |   |    ||||| ||||| ||| 
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcag--tgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                                           |||  ||     ||| ||||  | ||   |||| | ||||||    | |||||||||||||||||||||||||| || |  ||||| || |||||| | || || || |||||||| || ||  | |   |    ||||| |||||| || 
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattg-gcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------------gtgaattc-gtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                           |||| ||| ||   | |   ||  ||| ||| |||| | || | |    ||||||||||||| || || || ||||||||||||||||||||||||||| | || ||||| ||||| || || || ||||   |   |||||| || ||  || 
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattg-tgtgtgttttgagctatt---tgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------------gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                         | |          || | |  |||  | ||||||      ||||     |||||||| || |||||||| ||||| ||||||||||| ||||||||| | || ||||| ||||||||||| ||  | |   |    |||||  | ||| || 
gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttatataacatttatt-tttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------gtgaattcgtcggcatttgagctttgctgtttgttctaag------atttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                             |  ||         |||||  | | ||  |  | | ||       || |||    ||||| ||||| |||||||| |||||||||||||| || ||||||||| | || || || ||||||||||| || || |   |    |||||  | ||  || 
gtatgccttttctgctcttctcccacttatttatctcatattgtttga--tctactaatcatacaaaacatgtcatctgcttcacagGAGTTCAAGGGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGC

upper sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S311_33V6.2 (Physcomitrella patens), 3'ss of exon 3
gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT---------
                            ||  ||  | |        ||| | || ||||| || || || |||||||| |||||||||||||||||| | || ||||| ||||||||||| ||| | |    |   |||||||  || |||          
----------------------------gtcagtggtgaccagcttggtg-atgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaagCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169101825|gb|FE500771.1|FE500771
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169048524|gb|FE454419.1|FE454419
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169049454|gb|FE458300.1|FE458300
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169055042|gb|FE462957.1|FE462957
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169073800|gb|FE484021.1|FE484021
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169112742|gb|FE515118.1|FE515118
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169075486|gb|FE482496.1|FE482496
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169054062|gb|FE462297.1|FE462297
EST:     ATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: ATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169074735|gb|FE483305.1|FE483305
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169035698|gb|FE446183.1|FE446183
EST:     TGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169101824|gb|FE500770.1|FE500770
EST:     GAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: GAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169056221|gb|FE464070.1|FE464070
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169075485|gb|FE482495.1|FE482495
EST:     ATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: ATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169102758|gb|FE503966.1|FE503966
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169058309|gb|FE465023.1|FE465023
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169074734|gb|FE483304.1|FE483304
EST:     TATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169063115|gb|FE471637.1|FE471637
EST:     GAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: GAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169049702|gb|FE457768.1|FE457768
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169064127|gb|FE472314.1|FE472314
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169054809|gb|FE460605.1|FE460605
EST:     TCTATGAGAAGCGCATCTCGCAGGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169061223|gb|FE470349.1|FE470349
EST:     CTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: CTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169065536|gb|FE474828.1|FE474828
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169051339|gb|FE457650.1|FE457650
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169048523|gb|FE454418.1|FE454418
EST:     GAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: GAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169067221|gb|FE474989.1|FE474989
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169054063|gb|FE462298.1|FE462298
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169036060|gb|FE446766.1|FE446766
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169070522|gb|FE479799.1|FE479799
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169039385|gb|FE449112.1|FE449112
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169101289|gb|FE501977.1|FE501977
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169035699|gb|FE446184.1|FE446184
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169040201|gb|FE448123.1|FE448123
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169039338|gb|FE449091.1|FE449091
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
EST: gi|169061224|gb|FE470350.1|FE470350
EST:     TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAG                         GAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC
genomic: TCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 88

GAAAATCTTCTATGAGAAGCGCATCTCGCAAGAGGTGCCCGGAGATGGGCTCGGAGAGgtgaattcgt ... tgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT
                                         taagattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC