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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatacaaaatcaagcatttcttatctccaatctatactgacaaacattgtgtgaatttcaagGTCTCGTGCAAGGGTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA

Basic information

species Selaginella moellendorffii
transcript EFJ14602
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14602 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os02g34580.1 (Oryza sativa), 3'ss of exon 3
---------------------------gtgagtatacaa--aatcaagcatttcttatctccaatctatactgacaaacattgtgtgaatttca----agGTCTCGTGCAAGGGTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
                           || | |||      | |    |||||    | | ||    | ||| || |    |||    |||       ||| || |||||||| |||||||| |||   ||||| |||||||| || ||||||||||||||||| ||||||||  ||||||||  || | | ||| | ||
caattttcatgctaggtgtgaaagtatgtaaatatgtggttattttgccattttaattgttcagcaaagactaactagatgtgtcctgattcatgaacagGCCTGGTGCAAGGTTGGGCAGCTATTGTGATGGGAATTCTCTCTGGTAGCATTCCATGGTACACCATGATGGTGCTGCACAAGAAATGGTCATTCATGCA

upper sequence: EFJ14602 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os01g65000.1 (Oryza sativa), 3'ss of exon 1
---------------------------------gtgagtatacaaaatcaagcatttcttatctccaatctatactgacaaacattgtgtgaatttcaagGTCTCGTGCAAGGGTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
                                  |  ||||          || |  || |||     |  |    | |      ||  ||       ||| || ||||| || ||||| |||||    ||||| || |||||||||||||| || |||| |||||||||||| ||||||||||| |||| | |||| ||
gatttatctgaaattttaaaccgagttagtaaaatctgtatctggggctgggcgtaactgatccgtcttgaacggcgtctgcatatgcatggtcgatcagGCCTGGTGCAGGGTTGGGCGGCGATCGTGATGGGCATCCTCTCCGGCAGCATCCCGTGGTTCACGATGATGGTGGTGCACAAGCGGTCGCGCCTCCTGCA

upper sequence: EFJ14602 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G043193_T01 (Zea mays), 3'ss of exon 1
---------------------------------gtgagtatacaaaatcaagcatttcttatctccaatctatac-tgacaaacattgtgtgaatttcaagGTCTCGTGCAAGGGTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
                                 | ||  |      |   | ||||    || |  | |   ||| | |||||||   | | | |    ||| || ||||||||||||||||| |||  |||||| |||||||| || ||||| || |||||||| ||||||||  ||||||||  || | ||||| | ||
ccaagaatttcatggtacagattataatttgtagcgaacaaggcccaaagaacattctccattttaactggttacctaacaaacaccttct-attcaatagGCCTGGTGCAAGGGTGGGCAGCCATTGTCATGGGAATTCTCTCAGGTAGCATCCCCTGGTACACTATGATGGTACTGCACAAGAAATGGTCCTTCATGCA

upper sequence: EFJ14602 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G335218_T01 (Zea mays), 3'ss of exon 1
-----gtgagtatacaaaatcaagcat---ttcttatctccaatcta-tactgaca-----aacattgtg-tgaatttca-agGTCTCGTGCAAGGGTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
     ||   ||||||  ||   |  |    ||    ||| | |||| ||||| ||     | | |  || ||  | |   ||| || || || || ||||| |||||    ||||| || ||||| |||||||| || |||| |||||||||||| ||||||||||| || | | | || ||
gtacagtacatatacacgattctgtctacaatcactactctactctactactgccagtgccagcctgatgatggttcttgtagGCCTGGTCCAGGGCTGGGCGGCGATCGTGATGGGCATGCTCTCGGGCAGCATCCCGTGGTGCACGATGATGGTGGTGCACAAGCGCTCCCGCCTGCTGCA

upper sequence: EFJ14602 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv07s0031g02990.t01 (Vitis vinifera), 3'ss of exon 2
----------gtgagtatacaaaatcaagcatttcttatctccaatctatactgacaaacattgtgtgaatttcaagGTCTCGTGCAAGGGTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
           |   | | |    |     |      |  |  ||   |||   | | | ||  |    ||||  ||| ||||| ||||| ||||| || || |  |||||||| |||||||||||| ||||||||| ||| |||||| || | |||||||| ||  |  |||| ||
gtttctctttctccattttcttctttggagaaaaaaaaaatg-aacaaataaataaataaatcattcatatttacagGACTCGTTCAAGGATGGGCGGCCATATTAATGGGGATCCTCTCCGGCAGCGTTCCATGGTTCACCATGATGATCCTCCACAAGCGCTCCACTCTCCTCCA

upper sequence: EFJ14602 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv07s0031g02950.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------------gtgagtatacaaaatcaagcatttcttatct------ccaatc-tatactgacaaacattgtgtgaatttcaagGTCTCGTGCAAGGGTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
                                |   | |   ||||  |   ||| || | |      |  ||  ||   |||||   |     |||||    ||| || || ||||| ||||| || ||   |||||| ||||||||||||||| | ||||||| ||| |||||| || | |||||||| | | |  | || ||
gtcacatctatgcgtttttttttttttcttattccatgttttaaatttaagttttattttttggtggactgataataagatgacatgtaaataatgaatgagcagGACTAGTTCAAGGATGGGCGGCCATAGTCATGGGCATTCTCTCCGGCAGCGTCCCATGGTTCACCATGATGATCCTCCACAAGCGCTGGACTCTTCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaagcatttcttatctccaatctatactgacaaacattgtgtgaatttcaagGTCTCGTGCAAGGGTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
                           tactgac  putative branch site (score: 1)
        atttcttat  TA-rich tract