1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagaattttggatgagcgctgggcgatttgtgatgaattttcttttagGTGCCCGTGCTAGAGACACCGGATGGTCCGATCAGTGAGAGCAATGCGATTGCTAGATACG
species | Selaginella moellendorffii |
transcript | EFJ14564 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGTGAGCAACAAGACGCCCGAGTTCTTGAAGCTGAATCCGTTGGGAAAG GTGCCCGTGCTAGAGACACCGGATGGTCCGATCAGTGAGAGCAATGCGATTEST: gi|169110769|gb|FE509837.1|FE509837
genomic: GAGTGAGCAACAAGACGCCCGAGTTCTTGAAGCTGAATCCGTTGGGAAAGgtgagaattt ... tttcttttagGTGCCCGTGCTAGAGACACCGGATGGTCCGATCAGTGAGAGCAATGCGATT
EST: GAGTGAGCAACAAGACGCCCGAGTTCTTGAAGCTGAATCCGTTGGGAAAG GTGCCCGTGCTAGAGACACCGGATGGTCCGATCAGTGAGAGCAATGCGATTEST: gi|169039252|gb|FE448329.1|FE448329
genomic: GAGTGAGCAACAAGACGCCCGAGTTCTTGAAGCTGAATCCGTTGGGAAAGgtgagaattt ... tttcttttagGTGCCCGTGCTAGAGACACCGGATGGTCCGATCAGTGAGAGCAATGCGATT
EST: GAGTGAGCAACAAGACGCCCGAGTTCTTGAAGCTGAATCCGTTGGGAAAG GTGCCCGTGCTAGAGACACCGGATGGTCCGATCAGTGAGAGCAATGCGATT
genomic: GAGTGAGCAACAAGACGCCCGAGTTCTTGAAGCTGAATCCGTTGGGAAAGgtgagaattt ... tttcttttagGTGCCCGTGCTAGAGACACCGGATGGTCCGATCAGTGAGAGCAATGCGATT
gtgagaattttggatgagcgctgggcgatttgtgatgaattttcttttagGTGCCCGTGCTAGAGACACCGGATGGTCCGATCAGTGAGAGCAATGCGATTGCTAGATACG
ttttctttt CT-rich tract
atgaattttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaattttggatgagcgctgggcgatttgtgatgaattttcttttagGTGCCCGTGCTAGAGACACCGGATGGTCCGATCAGTGAGAGCAATGCGATTGCTAGATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA