1 5' 3' | 2 5' 3' | 3 5' 3' |
...cctccatagctcgatctggaaagcctaaagtatttctttttcctttctcgtttgtttgttttctcgtgttttagtgatttcttatcttctttcttggcagACGCTTGGAAGAGAATCTCTCCGGTGGAAGCAAACACTTTGTGGAGAGCTGTGGACTTCCCATAAGTACTTACTTCAGTGCTTTGAAGCTACTGTGGCTG
species | Selaginella moellendorffii |
transcript | EFJ14127 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tctcgtttgtttgttttctcgtgttttagtgatttcttatcttctttcttggcagACGCTTGGAAGAGAATCTCTCCGGTGGAAGCAAACACTTTGTGGAGAGCTGTGGACTTCCCATAAGTACTTACTTCAGTGCTTTGAAGCTACTGTGGCTG
tgatttcttatcttct CT-rich tract
atttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctccatagctcgatctggaaagcctaaagtatttctttttcctttctcgtttgtttgttttctcgtgttttagtgatttcttatcttctttcttggcagACGCTTGGAAGAGAATCTCTCCGGTGGAAGCAAACACTTTGTGGAGAGCTGTGGACTTCCCATAAGTACTTACTTCAGTGCTTTGAAGCTACTGTGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - tagctcg
- - - - - - - - - - - - - - - -atttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcttct