ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

gtttgaaaatcttctcgtctatcgcttttctcccctttctactttcattatagatgctatgagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT

Basic information

species	Selaginella moellendorffii
transcript	EFJ13677
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: EFJ13677 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S135_29V6.2 (Physcomitrella patens), 3'ss of exon 2

----------------------------------------------gtttgaaaatcttctcgtctatcgcttttctcccctttctactttcattatagatgctatgagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT---
                                                ||  |    || |  |  ||  | ||  |         | ||  | | | |   |  |  || || ||| | | ||||||||   ||| ||| | || ||  |||||||||||||||| ||||| ||||||||||| ||| | || || || |||||| |||||||||   
gtacgtttcgtcgctccagtatttcgtgtctaccggttcaagctcaccttttatgctttttacttcatgccgttcattaagcgcggaattctaatgtggccacattctga-tgcagGCTGCTAGCTCTGG---AGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAATGGATTCGGACGTATCGGACGCAACTTCGTCCGCTGCTGGC

upper sequence: EFJ13677 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S264_65V6.1 (Physcomitrella patens), 3'ss of exon 3

------------------------------------------------------------------------------------------gtttgaaaatct----tctcgtctatcgcttttctcccctt-tctactttcatt-atagatgctat--gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT---
                                                                                           ||| |||||      |   | ||||  |     |     | | |||  | | | | |  ||| ||   |   || |||   | ||||| ||   |||||   | || ||  |||||||||||||||| ||||| ||||| ||||| ||| | || || || ||||||||||||||||   
gtaagtaataccttatcagtgctcatatctcatccgtcacacgtcttttggaagagtgacacacatgtacgcattctattttgaaactagatttcaaaattcgtaattcagactatgaccacattgttaatgtatacgattactgacaattgcgattttattctgcagGCCGCCAGCTCCGG---AGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAACGGATTCGGACGTATCGGACGCAACTTCATCCGCTGCTGGC

upper sequence: EFJ13677 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S264_71V6.1 (Physcomitrella patens), 3'ss of exon 2

--------------------------------------------------------------------gtttgaaaatcttctcgtctatcgcttttctcccctttctactttcattatagatgctatgagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT---
                                                                      || ||||     || ||  ||        ||   |     || | | | |  | | ||     |  ||  | | ||||| ||   |||||   | || ||  |||||||||||||||| ||||| ||||| ||||| ||| | || || || ||||||||||||||||   
gtaagcatcctccgaatttcctgtatctgtgcatgccatggaatgacaaatattgatgtgcgactataccttaaaaaaaaaatcttccttcagaagaaaccatgtcgatgttgcctgacaccttccattgt--tccagTCTGCCAGCTCCGG---AGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAACGGATTCGGACGTATCGGACGCAACTTCATCCGCTGCTGGC

upper sequence: EFJ13677 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S135_21V6.2 (Physcomitrella patens), 3'ss of exon 2

---------------gtttgaaaatcttctcgtctatcgcttttctcccct-ttcta---ctttcattatagatgctatgagagtgtagGTTTCGAGCT-CTGG---TGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT---
                |  || ||| ||    | ||    |     | | |  || |   |  | ||    ||   |     |  ||   || |   |  || |   |||||| ||| | || ||  |||||||||||||||| || || ||||||||||| ||| | || || || |||||| |||||||||   
gtatgtacctatcttttaagataatgtttcattgtactaatacagccacttgctccaaagccataatcgctgacattgccgtaccgtgaattgcagTCCGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTCGCCATCAATGGATTCGGACGTATCGGACGCAACTTCGTCCGCTGCTGGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|169054147|gb|FE463110.1|FE463110

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169108257|gb|FE513566.1|FE513566

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169105410|gb|FE507669.1|FE507669

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169019431|gb|FE427117.1|FE427117

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169061677|gb|FE469867.1|FE469867

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169099029|gb|FE501763.1|FE501763

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169083187|gb|FE493792.1|FE493792

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169049798|gb|FE458839.1|FE458839

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169033150|gb|FE441482.1|FE441482

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169036130|gb|FE445144.1|FE445144

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169069981|gb|FE476450.1|FE476450

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169036693|gb|FE444199.1|FE444199

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169030819|gb|FE440297.1|FE440297

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169106335|gb|FE506255.1|FE506255

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169110287|gb|FE510616.1|FE510616

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169019833|gb|FE426920.1|FE426920

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169052039|gb|FE460378.1|FE460378

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169068901|gb|FE477242.1|FE477242

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169111233|gb|FE510860.1|FE510860

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169066942|gb|FE474398.1|FE474398

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169037786|gb|FE442497.1|FE442497

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169071889|gb|FE477630.1|FE477630

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169114147|gb|FE516826.1|FE516826

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169042499|gb|FE450980.1|FE450980

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169044071|gb|FE451657.1|FE451657

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169079682|gb|FE486346.1|FE486346

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169077647|gb|FE484909.1|FE484909

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169071895|gb|FE477636.1|FE477636

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169066496|gb|FE476253.1|FE476253

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169061679|gb|FE469869.1|FE469869

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169058080|gb|FE463975.1|FE463975

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169031026|gb|FE440348.1|FE440348

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169108812|gb|FE513081.1|FE513081

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169105155|gb|FE504827.1|FE504827

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169115597|gb|FE517807.1|FE517807

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169064609|gb|FE471340.1|FE471340

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169061368|gb|FE470936.1|FE470936

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169069791|gb|FE480303.1|FE480303

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169022182|gb|FE430985.1|FE430985

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169071780|gb|FE477157.1|FE477157

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169072313|gb|FE479406.1|FE479406

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169100502|gb|FE502703.1|FE502703

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169067263|gb|FE473874.1|FE473874

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169068350|gb|FE480721.1|FE480721

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169102749|gb|FE508611.1|FE508611

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169103008|gb|FE504736.1|FE504736

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169033912|gb|FE441944.1|FE441944

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169056259|gb|FE464394.1|FE464394

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169068401|gb|FE478991.1|FE478991

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169097531|gb|FE497973.1|FE497973

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169083655|gb|FE495895.1|FE495895

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169024910|gb|FE435537.1|FE435537

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169059314|gb|FE467482.1|FE467482

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169113870|gb|FE515925.1|FE515925

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169037516|gb|FE443059.1|FE443059

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

EST: gi|169099413|gb|FE501003.1|FE501003

EST:     GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAG                         GTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA
genomic: GGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 99

GGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACATTCGGGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTTGCAAGgtttgaaaat ... gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT

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atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

cgtctatcgcttttctcccctttctactttcattatagatgctatgagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT

                           tttcattata  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgaaaatcttctcgtctatcgcttttctcccctttctactttcattatagatgctatgagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT