1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgactaccatttttcttctcctccagtccccagtttgatgatatcttttttttcttctttcagGGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAACATGTCGAGGGTATATACTGGTGGTATCGTGCCGACGCTCTTTGGCGAC
species | Selaginella moellendorffii |
transcript | EFJ13527 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTATTATGATCAAAGCGAATAGTCTTCTTCGTAAGCAGACGTCTCTAAGA GGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAAEST: gi|169029062|gb|FE437565.1|FE437565
genomic: CTATTATGATCAAAGCGAATAGTCTTCTTCGTAAGCAGACGTCTCTAAGAgtaagtgact ... cttctttcagGGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAA
EST: CGTAAGCAGACGTCTCTAAGA GGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAAEST: gi|169060302|gb|FE467872.1|FE467872
genomic: CGTAAGCAGACGTCTCTAAGAgtaagtgact ... cttctttcagGGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAA
EST: GTAAGCAGACGTCTCT-AGA GEST: gi|169060302|gb|FE467872.1|FE467872
genomic: GTAAGCAGACGTCTCTAAGAgtaagtgact ... cttctttcag-
EST: GTAAGCAGACGTCTCT-AGA GEST: gi|169100039|gb|FE502357.1|FE502357
genomic: GTAAGCAGACGTCTCTAAGAgtaagtgact ... cttctttcag-
EST: CTATTATGATCAAAGCGAATAGTCTTCTTCGTAAGCAGACGTCTCTAAGA GGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAAEST: gi|169101856|gb|FE504936.1|FE504936
genomic: CTATTATGATCAAAGCGAATAGTCTTCTTCGTAAGCAGACGTCTCTAAGAgtaagtgact ... cttctttcagGGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAA
EST: CGTAAGCAGACGTCTCT-AGA GEST: gi|169101856|gb|FE504936.1|FE504936
genomic: CGTAAGCAGACGTCTCTAAGAgtaagtgact ... cttctttcag-
EST: CGTAAGCAGACGTCTCT-AGA GEST: gi|169067932|gb|FE473451.1|FE473451
genomic: CGTAAGCAGACGTCTCTAAGAgtaagtgact ... cttctttcag-
EST: CTATTATGATCAAAGCGAATAGTCTTCTTCGTAAGCAGACGTCTCTAAGA GGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAAEST: gi|169022854|gb|FE430258.1|FE430258
genomic: CTATTATGATCAAAGCGAATAGTCTTCTTCGTAAGCAGACGTCTCTAAGAgtaagtgact ... cttctttcagGGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAA
EST: CTATTATGATCAAAGCGAATAGTCTTCTTCGTAAGCAGACGTCTCTAAGA GGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAA
genomic: CTATTATGATCAAAGCGAATAGTCTTCTTCGTAAGCAGACGTCTCTAAGAgtaagtgact ... cttctttcagGGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAA
atttttcttctcctccagtccccagtttgatgatatcttttttttcttctttcagGGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAACATGTCGAGGGTATATACTGGTGGTATCGTGCCGACGCTCTTTGGCGAC
gtttgat putative branch site (score: 11)
tgatatcttttttttc CT-rich tract
atgatatctttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgactaccatttttcttctcctccagtccccagtttgatgatatcttttttttcttctttcagGGAGAGCGAAAAACGTACATTCTAGTGGTCCTTGCCGCATTTCTCATCCAACATGTCGAGGGTATATACTGGTGGTATCGTGCCGACGCTCTTTGGCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG